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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatttgaaaaagtttcttttgctccagatgttttgaagacgttaattgatacatcccctgttctctttaacagGAGGTTTGCGCCATGAAGTTCAATGTCCTCGTTACGACTTATGAGTTCATTATGTATGATCGATCAAAACTCTCAAAAGTTGACTGGAAATATATTATAA

Basic information

species Arabidopsis thaliana
transcript AT2G46020.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46020.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA16G03950.1 (Glycine max), 3'ss of exon 8
gtaaa---atttgaaaaagtttcttttgctccagatgttttgaagacgttaattgatacatcccctgttctctttaa---cagGAGGTTTGCGCCATGAAGTTCAATGTCCTCGTTACGACTTATGAGTTCATTATGTATGATCGATCAAAACTCTCAAAAGTTGACTGGAAATATATTATAA
||||       | |   | |  ||     |    |   | |   |   || | || |  ||  ||| ||  ||  ||   ||||||||||| || ||||| || |||||||| || || |||||||||||||| |||||||| || |||||||| |||||| |||||||||| ||||| ||||
gtaagtgtgcctcacctaatcactcaaaatgttaagagtattttgttatttactgctgaatttcctttttgctacaattgcagGAGGTTTGTGCTATGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGACCGGTCAAAACTTTCAAAAATTGACTGGAAGTATATCATAA

upper sequence: AT2G46020.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA07G07550.1 (Glycine max), 3'ss of exon 7
gtaaaatt--tgaaaaagtttcttttgctccagatgttttgaagacgttaattgatacatcccctgttctctttaa---cagGAGGTTTGCGCCATGAAGTTCAATGTCCTCGTTACGACTTATGAGTTCATTATGTATGATCGATCAAAACTCTCAAAAGTTGACTGGAAATATATTATAA
||||   |     |  | |  |||    |     | |||||      ||   || |  ||  ||| ||  ||  ||   ||||||||||| || ||||| || |||||||| || || |||||||||||||| |||||||| || |||||||| |||||| |||| ||||| ||||| ||||
gtaagtgtgcctcactaatcacttaaaatgttagtattttgt---tattcgctgctgaatttcctttttgctacaattgcagGAGGTTTGTGCTATGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGACCGGTCAAAACTTTCAAAAATTGATTGGAAGTATATCATAA

upper sequence: AT2G46020.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv15s0046g02290.t01 (Vitis vinifera), 3'ss of exon 8
gtaaaatttgaaaaa--gtttcttttgct----ccagatgttttg--aagacgttaattgatacatcccctgt--tctctttaacagGAGGTTTGCGCCATGAAGTTCAATGTCCTCGTTACGACTTATGAGTTCATTATGTATGATCGATCAAAACTCTCAAAAGTTGACTGGAAATATATTATAA
||||  | || |||   | || ||||| |     |  || || ||  |    | | |   || | | |  |||  | | ||| | ||||||| || |||||||| || |||||||| || || |||||||| ||||| ||||||||||| |||||||| ||||||||||| ||||| ||||| || |
gtaagctgtgcaaatttgcttattttgttagtgtccaattttctgctatagtgctgaa-aatcctttctttgtcatgtgttttatagGAGGTGTGTGCCATGAAATTTAATGTCCTTGTGACAACTTATGAATTCATCATGTATGATCGTTCAAAACTTTCAAAAGTTGATTGGAAGTATATCATCA

upper sequence: AT2G46020.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: PP1S158_37V6.1 (Physcomitrella patens), 3'ss of exon 10
---------------------------gtaaaatttgaaaaagtttcttttgctccagatgttttgaagacgttaattgatacatcccctgttctctttaa-cagGAGGTTTGCGCCATGAAGTTCAATGTCCTCGTTACGACTTATGAGTTCATTATGTATGATCGATCAAAACTCTCAAAAGTTGACTGGAAATATATTATAA
                           | || | |||   || | |||   |      | | | | |     || ||   |        | ||| |||||  |||||||||||| | ||||||||||||||  | |||||||| ||||| |||||||||  ||||||||| ||| |  ||||||| || ||||| || || || |
gtcagttttcctactgtgcatctggcggcaatagttgttgaaatatctcaagtcttttaaggtat-agtctttttataacttggcatttttttccctttactcagGAGGTTTGCTCAATGAAGTTCAATGTGTTGGTTACGACATATGAATTCATTATGCGTGATCGATCCAAATTGGCAAAAGTGGATTGGAAGTACATAATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctccagatgttttgaagacgttaattgatacatcccctgttctctttaacagGAGGTTTGCGCCATGAAGTTCAATGTCCTCGTTACGACTTATGAGTTCATTATGTATGATCGATCAAAACTCTCAAAAGTTGACTGGAAATATATTATAA
                         aattgat  putative branch site (score: 4)
                                 catcccctgttctctt  CT-rich tract
                       ttaattgata  TA-rich tract