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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataagactcatctcaactctgcaaatctattcattagagttgttgtatggtttccgttgagcttgatgggtaaaaatatggcttttacttctgcagGGTGGAAATGACTATGAAATCTATGAATCACCAAAAACAATTGGCCATTCAG

Basic information

species Arabidopsis thaliana
transcript AT2G45790.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G45790.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA18G46390.1 (Glycine max), 3'ss of exon 10
-gtataagactcatctcaactctgcaaatctattcattagagttgttgtatggtttccgttgagcttgatgggtaaaaatatggcttttacttct--gcagGGTGGAAATGACTATGAAATCTATGAATCACCAAAAACAATTGGCCATTCAG
  | |     |  |  ||   ||  |  | ||      | |    |||   || |       ||   ||| | | ||  |     |||| |  ||  |||||||||||||||| ||||||||||||| ||   ||  ||  |||| ||  || 
atttttgtggtttttccactgctagatttttagcttccataagcattgctagggtaataggcagaaggattgattaatttccttttttttccgctgtgcaGGGTGGAAATGACCATGAAATCTATGAGTCTGAAAGGACTGTTGGGCACACA-

upper sequence: AT2G45790.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA09G39800.1 (Glycine max), 3'ss of exon 10
-----------gtataagactcatctcaactctgcaaatctattcattagagttgttgtatggtttccgttgagcttgatgggtaaaaatatggcttttacttctgcagGGTGGAAATGACTATGAAATCTATGAATCACCAAAAACAATTGGCCATTCAG
            | |    ||    | | |  ||  |   || |    ||     |||  |  |||||  | |  ||  |         | |   ||| ||   ||||||||||||||||| |||||||||| |||||   ||  || ||||| ||  |||
tccactgctagatttttagcttccataagcgttgatagggtaataggcagcagcattgattaatttcctataatttttttt--------tcttattttcacgg-tgcagGGTGGAAATGACCATGAAATCTACGAATCTGAAAGGACTATTGGGCACACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074350|gb|DR370107.1|DR370107
EST:     ACCTCGAGGACTTCAGTGAAATCCATTTCTTCGGTGACAAGACCTATGAG                         GGTGGAAATGACTATGAAATCTATGAATCACCAAAAACAATTGGCCATTCA
genomic: ACCTCGAGGACTTCAGTGAAATCCATTTCTTCGGTGACAAGACCTATGAGgtataagact ... acttctgcagGGTGGAAATGACTATGAAATCTATGAATCACCAAAAACAATTGGCCATTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtatggtttccgttgagcttgatgggtaaaaatatggcttttacttctgcagGGTGGAAATGACTATGAAATCTATGAATCACCAAAAACAATTGGCCATTCAG
                   gcttgat  putative branch site (score: 5)
                                        cttttacttct  putative PPT
                             taaaaatat  TA-rich tract