1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtaaaacataaacactacttgcaattttcgcttgaagagaacttctgtgtctaataaagttttttgatattctcagGGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAAGGGTAAAGAATGTACTTATAGCCTCTCAGTAGTATGAATTTCTGATAAT
species | Arabidopsis thaliana |
transcript | AT2G44530.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GACCATATGGCGTGTTCATGATGATTGCTCG GGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAA-EST: gi|86075310|gb|DR371067.1|DR371067
genomic: GACCATATGGCGTGTTCATGATGATTGCTCGgtgagtaaaa ... atattctcagGGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAA
EST: TAGCAAACCTTCTTGGGGAGACCATATGGCGTGTTCATGATGATTGCTCG GGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAAEST: gi|86075718|gb|DR371475.1|DR371475
genomic: TAGCAAACCTTCTTGGGGAGACCATATGGCGTGTTCATGATGATTGCTCGgtgagtaaaa ... atattctcagGGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAA
EST: TAGCAAACCTTCTTGGGGAGACCATATGGCGTGTTCATGATGATTGCTCG GGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAAEST: gi|164151383|gb|EL999687.1|EL999687
genomic: TAGCAAACCTTCTTGGGGAGACCATATGGCGTGTTCATGATGATTGCTCGgtgagtaaaa ... atattctcagGGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAA
EST: GACCATATGGCGTGTTCATGATGATTGCTCG GGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAA-
genomic: GACCATATGGCGTGTTCATGATGATTGCTCGgtgagtaaaa ... atattctcagGGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAA
caattttcgcttgaagagaacttctgtgtctaataaagttttttgatattctcagGGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAAGGGTAAAGAATGTACTTATAGCCTCTCAGTAGTATGAATTTCTGATAAT
tattctc CT-rich tract
tctaataaagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaaaacataaacactacttgcaattttcgcttgaagagaacttctgtgtctaataaagttttttgatattctcagGGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAAGGGTAAAGAATGTACTTATAGCCTCTCAGTAGTATGAATTTCTGATAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA