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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtattactacattctctgaaaccaaaagtttttaaattctgtaacttgaaaaaacctttccctaatcttcaacagATGATTTCGACGATTTCTGTCTCCGAGCATTGAAACTAGCTGAGGAATCAAACGGTGCTCCATTGTTCACAGTGACTCAAACCCACACAGCGATAAACCA

Basic information

species Arabidopsis thaliana
transcript AT2G44140.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164150662|gb|ES020841.1|ES020841
EST:     GGAATCACTCGACCCATCTCTAGCTCTAGGATTCTATTGCCGCGACAAAG                         ATGATTTCGACGATTTCTGTCTCCGAGCATTGAAACT
genomic: GGAATCACTCGACCCATCTCTAGCTCTAGGATTCTATTGCCGCGACAAAGgtattgtatt ... tcttcaacagATGATTTCGACGATTTCTGTCTCCGAGCATTGAAACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accaaaagtttttaaattctgtaacttgaaaaaacctttccctaatcttcaacagATGATTTCGACGATTTCTGTCTCCGAGCATTGAAACTAGCTGAGGAATCAAACGGTGCTCCATTGTTCACAGTGACTCAAACCCACACAGCGATAAACCA
                                       ccctaat  putative branch site (score: 3)
                                  cctttccctaatcttc  CT-rich tract
        tttttaaattctgtaa  TA-rich tract