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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaactttgtcccttggaagatacttttttacggttgagaaaatattatagtacctccttccagtggtgtcaatcacgctcacttggagttttctttttaaccaaacagGTTGCACTTGGCTTGGTTGTTGCCTTGAACTACCACAACCCTTTCTTGAATCCGTATGAGGAATTTCAG

Basic information

species Arabidopsis thaliana
transcript AT2G43400.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43400.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv05s0102g01110.t01 (Vitis vinifera), 3'ss of exon 8
-gtaactaactttgtcccttggaagatacttttttacggttgagaaaatattatagtacctccttccagtggtgtcaatcacgctcacttggagttttctttttaaccaaacagGTTGCACTTGGCTTGGTTGTTGCCTTGAACTACCACAACCCTTTCTTGAATCCGTATGAGGAATTTCAG
 | ||||      |  |     | || |  |  |     ||   | | || |    |       ||  ||||||      | | || |||||         ||  | || ||||||| || ||||| | || ||||| ||||| || ||||||||||||||||| || ||||| ||||| |||
tgcaacttctgaggcactaccaatgacatatgctgttcattacaagattaatgattttggaagctcatgtggtgat----atgttc-cttgg---------ttgcaacacacagGTTTCAATTGGCCTTGTGGTTGCTTTGAATTATCACAACCCTTTCTTGAACCCTTATGAAGAATTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116411359|gb|EG453951.1|EG453951
EST:     ATCCCAAGACATATGGAGGTTCTTTCTTGTACCACATGAACGATAGACAG                         GTTGCACTTGGCTTGGTTGTTGCCTTGAACTACCACAACCCTTTCTTGAAT
genomic: ATCCCAAGACATATGGAGGTTCTTTCTTGTACCACATGAACGATAGACAGgtaactaact ... aaccaaacagGTTGCACTTGGCTTGGTTGTTGCCTTGAACTACCACAACCCTTTCTTGAAT
EST: gi|164216602|gb|EL992841.1|EL992841
EST:     ATCCCAAGACATATGGAGGTTCTTTCTTGTACCACATGAACGATAGACAG                         GTTGCACTTGGC
genomic: ATCCCAAGACATATGGAGGTTCTTTCTTGTACCACATGAACGATAGACAGgtaactaact ... aaccaaacagGTTGCACTTGGC
EST: gi|124817316|gb|EH902182.1|EH902182
EST:     ATCCCAAGACATATGGAGGTTCTTTCTTGTACCACATGAACGATAGACAG                         GTTGCACTTGGCTTGGTTGTTGCCTTGAACTACCACAACCCTTT
genomic: ATCCCAAGACATATGGAGGTTCTTTCTTGTACCACATGAACGATAGACAGgtaactaact ... aaccaaacagGTTGCACTTGGCTTGGTTGTTGCCTTGAACTACCACAACCCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccttccagtggtgtcaatcacgctcacttggagttttctttttaaccaaacagGTTGCACTTGGCTTGGTTGTTGCCTTGAACTACCACAACCCTTTCTTGAATCCGTATGAGGAATTTCAG
                                         ttttaac  putative branch site (score: 2)
                                   ttttctttttaacc  CT-rich tract
                                 agttttctttttaa  TA-rich tract