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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagaatggaaatctattaaaaacatttctccggtccttagaatatctatctcaatcatggcttctcactttttacctttcatctacagGAATTCCTTGCTAGTGAAAATAGGCCAAAGGCAACACATGTAACTCGTGTAATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTTTGACTCTTGGC

Basic information

species Arabidopsis thaliana
transcript AT2G41740.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G41740.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 7
gtaaagaatggaaatctattaaaaacatttctccggtccttagaatatctatctcaatcatggcttctcactttttacctttcatctacagGAATTCCTTGCTAGTGAAAATAGGCCAAAGGCAACACATGTAACTCGTGTAATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTTTGACTCTTGGC
        | |||   ||| |   |  | ||   | || ||| |           ||  | |   ||||| | |  |  |||| ||  ||||||||  || ||||  ||||||| ||||||||||| | |||||| || || || ||||| |||||| | ||||| |||||||| |||||||| |||||||
-------gtagaagcttatcatccatttatccatgttctttata----------taacaacgaactctca-tctccaattttcttcctcagGAATTTGTTTCTAGCCAAAATAGACCAAAGGCAACTCGTGTAACCCGGGTTATTCAAGGGTATGAGACACATTCATTCAAGTCCAACTTTGATTCTTGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064692|gb|DR360449.1|DR360449
EST:     TCAATCTGCTGAG                         GAATTCCTTGCTAGTGAAAATAGGCCAAAGGCAACACATGTAACTCGTGTA
genomic: TCAATCTGCTGAGgtaaagaatg ... tcatctacagGAATTCCTTGCTAGTGAAAATAGGCCAAAGGCAACACATGTAACTCGTGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttagaatatctatctcaatcatggcttctcactttttacctttcatctacagGAATTCCTTGCTAGTGAAAATAGGCCAAAGGCAACACATGTAACTCGTGTAATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTTTGACTCTTGGC
                            ttctcac  putative branch site (score: 2)
                           cttctcactttttacc  CT-rich tract
       aatatctat  TA-rich tract