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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatatcaccttttcactcttctatggcatacgtataatcttgtcaactcatgtttcaaaaatttaacatactatatatgataactcttcagCTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAG

Basic information

species Arabidopsis thaliana
transcript AT2G41490.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083719|gb|DR379478.1|DR379478
EST:     TCATCTTCTTTCTTCCTCAAGTTCTGAACTTTCTATTATCGCTTCCTCAG                         CTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAG
genomic: TCATCTTCTTTCTTCCTCAAGTTCTGAACTTTCTATTATCGCTTCCTCAGgttcatatca ... aactcttcagCTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAG
EST: gi|116441309|gb|EG483901.1|EG483901
EST:     TCATCTTCTTTCTTCCTCAAGTTCTGAACTTTCTATTATCGCTTCCTCAG                         CTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAG
genomic: TCATCTTCTTTCTTCCTCAAGTTCTGAACTTTCTATTATCGCTTCCTCAGgttcatatca ... aactcttcagCTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttgtcaactcatgtttcaaaaatttaacatactatatatgataactcttcagCTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAG
                                         tgataac  putative branch site (score: 2)
                                               ctcttc  CT-rich tract
             atgtttcaaaaattta  TA-rich tract