1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttgtgattcagacccagggtatattgttattttttgttttggttttaatttttaatactgtggggaatctcattctcctactctgtttgtcaactcacagGGCCAATATAAGTCAACATTGGTGTGTCCAATCTGCAACAAGGTTTCTGTAACGTTTGATCCCTTCATGTACCTGTCTTTGCCGCTGCAGTTCAACACAA
species | Arabidopsis thaliana |
transcript | AT2G40930.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATTGCTCGTAATGACTCAATAATAGTTGATGTTTGTCAG GGCCAATATAAGTCAACATTGGTGTGTCCAATCTGCAACAAGGTTTCTGTAEST: gi|116470354|gb|EG512946.1|EG512946
genomic: TATTGCTCGTAATGACTCAATAATAGTTGATGTTTGTCAGgtcagctgta ... caactcacagGGCCAATATAAGTCAACATTGGTGTGTCCAATCTGCAACAAGGTTTCTGTA
EST: GGAAAAATCATATTGCTCGTAATGACTCAATAATAGTTGATGTTTGTCAG GGCCAATATAAGTCAACATTGGTGTGTCCAATCTGCAACAAGGTTTCTGTA
genomic: GGAAAAATCATATTGCTCGTAATGACTCAATAATAGTTGATGTTTGTCAGgtcagctgta ... caactcacagGGCCAATATAAGTCAACATTGGTGTGTCCAATCTGCAACAAGGTTTCTGTA
taatttttaatactgtggggaatctcattctcctactctgtttgtcaactcacagGGCCAATATAAGTCAACATTGGTGTGTCCAATCTGCAACAAGGTTTCTGTAACGTTTGATCCCTTCATGTACCTGTCTTTGCCGCTGCAGTTCAACACAA
ttttaat putative branch site (score: 3)
tttaatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgattcagacccagggtatattgttattttttgttttggttttaatttttaatactgtggggaatctcattctcctactctgtttgtcaactcacagGGCCAATATAAGTCAACATTGGTGTGTCCAATCTGCAACAAGGTTTCTGTAACGTTTGATCCCTTCATGTACCTGTCTTTGCCGCTGCAGTTCAACACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - -tcagacc
- - - - - - - - - - - - - - - - - -gttttgg