1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatctctttcgtctaatcttgattgtgaaactagcctcatatttgggaacctagtataccgatatatcttttcaaacacattgttgttttcaacaatttgtttgcggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGTTGTGCTTGAAGAGTTGAAAGAATCGCAATCGAAAAATAGATATTTAAAA
species | Arabidopsis thaliana |
transcript | AT2G37240.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAG GACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGTEST: gi|125325821|gb|EL339901.1|EL339901
genomic: GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
EST: TATATACGCAAG GACAAAGAAGCCGGTGATTGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGEST: gi|116467378|gb|EG509970.1|EG509970
genomic: TATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGA-TGACCCGCCTGTTGAAGAGATCCTTAAAGCGTG
EST: GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAG GACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGTEST: gi|125260115|gb|EL274200.1|EL274200
genomic: GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
EST: TATATACGCAAG GACAAAGAAGCCGGTGATTGTACCCGCCTGTTGAAGAGATCCTTAAAGCGTEST: gi|125117751|gb|EL166753.1|EL166753
genomic: TATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGA-TG-ACCCGCCTGTTGAAGAGATCCTTAAAGCGT
EST: ATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTACTTATATACGCAAG GACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGTEST: gi|116467371|gb|EG509963.1|EG509963
genomic: ATCTTAGTTGCTGGCCCTGGGAAAGATAACATCT-CTTATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
EST: GAATTTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAG GACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGTEST: gi|125186352|gb|EL201306.1|EL201306
genomic: GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
EST: GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAG GACAAAGAAGCCGGTGATGACCCGCCTGTTEST: gi|125258058|gb|EL272143.1|EL272143
genomic: GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTT
EST: GCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAG GACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
genomic: GCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
cgatatatcttttcaaacacattgttgttttcaacaatttgtttgcggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGTTGTGCTTGAAGAGTTGAAAGAATCGCAATCGAAAAATAGATATTTAAAA
aatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctctttcgtctaatcttgattgtgaaactagcctcatatttgggaacctagtataccgatatatcttttcaaacacattgttgttttcaacaatttgtttgcggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGTTGTGCTTGAAGAGTTGAAAGAATCGCAATCGAAAAATAGATATTTAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA