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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatcccatttctctcacttaccttctttttgaatctctttctcagttttgttttaactcacattttgtctatggagcagAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGAC

Basic information

species Arabidopsis thaliana
transcript AT2G32430.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os03g38050.1 (Oryza sativa), 3'ss of exon 8
gtataatcccatttctctcacttaccttctttttgaatctctttctcagttttgttttaactcacattttgtctatggagcagAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGAC
||| | |||||| |   |  | |  |||| ||    || | ||   ||| |        ||  |  | || | |||    ||| || || |||||||||||||| ||||| |||||||| || ||    || ||||||||||||||||| || || || |||||||| || || || |  || 
gta-agtcccatgttgttgtcatgtcttcctt---gatgttttaaacagctgaccaaataccaatttgttttttattct-cagGGGTGTAAGATACCATGAGCCCGAGTACTGGAAATTCGGCGAATGGGGGAACAAGTACTTCCGTCATGCAACCGGCCAGTTATATGCAATCTCCAAGGAT

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA13G38500.1 (Glycine max), 3'ss of exon 8
----gtataatcccatttctctcacttaccttctttt--------tgaatctctttctcagttttgttttaa--ctcacattttgtc--tatggagcagAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGAC
    | |||||    |||    |   | |  | |  |          ||  | | |     |||   ||  |   ||  | || | |  | |   ||||||| || || |||||||| || || || ||||||||||| |||  |||||||||||||||||| ||||| ||||||||||| || |||||||| | ||| 
gtgagaataattttcttttatccttgtgctatttcatgaaagggtcaaaaatatgtaatgctttcacttctagcttcttacttggccactttcttgcagAGGGGTAAGGTACCATGAACCAGAATACTGGAAATTTGGAGAGGCTGGAAACAAGTACTTCCGCCACGCCACTGGACAGTTGTATGCCATTTCAAAAGAT

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA12G10520.1 (Glycine max), 3'ss of exon 8
-----gtataatcccatttctctcacttacctt--ctttttgaatctctttctcagttttgttttaactcacattttgtctatggagcagAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGAC
       ||  |    ||| | |   ||   ||   ||  | || | ||||  |   |   || ||||        |   | ||  ||||||| || || |||||||| |||||||| ||||||||||| |||  |||||||| |||||||||||| || || || ||||| || |||||||| |  || 
gtgagaaatgcttatttttgtttttattgaattgaattactaaagcactttgacctgtagcttctaacctgagaaatactt-tgttgcagAGGGGTAAGGTACCATGAACCTGAGTACTGGAAATTTGGAGAGGCTGGAAACAGGTACTTCCGTCATGCCACAGGGCAGTTGTATGCCATTTCGAATGAT

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA12G31980.1 (Glycine max), 3'ss of exon 8
-------gtataatcccatttctctcacttaccttctttttgaatc-----tctttctcagttttgttttaa--ctcacattttgtc--tatggagcagAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGAC
         ||| ||   | ||  |    ||  |  |    |  ||     | | |     |||  |||  |   ||  | |||| |  | |   ||||||| || || |||||||| || || || ||||||||||| |||   ||||||||||||||||| ||||| || |||||||| || |||||||| | ||| 
gtgagaatcatattcttgtatccttgtgctatttcatgaaagggtcataaatatgtagtgttttcatttctagcttcttagtttgccactttcttgcagAGGGGTAAGGTACCATGAACCAGAATACTGGAAATTTGGAGAGGCCGGAAACAAGTACTTCCGCCACGCCACAGGACAGTTGTATGCCATTTCAAAAGAT

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA06G46230.2 (Glycine max), 3'ss of exon 8
------gtataatcccatttctctcacttaccttc--tttttgaatctctttctcagttttgttttaactcacattttgtctatggagcagAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGAC
        || ||    ||| | |   ||   ||   || || || ||||||  |   ||  || |||||  |  |   | | | |  |||||| || || |||||||| |||||||| ||||| ||||| |||  ||||||||  ||||||||||| || || |||||||| || |||||||| |  || 
gtgagaaaatgattttctttgtttttattgaattgaattattaaagctctttgacttgttgcttctaacttgccctac-tttgttgcacagAGGGGTAAGGTACCATGAACCTGAGTACTGGAAGTTTGGAGAGGCTGGAAACAGATACTTCCGTCATGCCACAGGACAGTTGTATGCCATTTCAAACGAT

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv12s0059g00640.t01 (Vitis vinifera), 3'ss of exon 8
gtataatcccatttctctcacttaccttctttt--tgaatctcttt----ctcagttttgttttaactcacattttgtctatggagcagAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGAC
   |||     ||||| |   ||   ||  ||   |||| || |||    || |||||  | ||    || |||||     || | ||| ||||| ||||||||||| || |||||||||||||||||||||   |||||||| || |||||||||||||| |||||| |||| |||||||| | ||| 
--gtaagtgactttctttagattgttttggttacgtgaaactgtttagttcttagtttcttatttgtccatatttt-----tgtaacagGGGAGTGAGATACCATGAACCCGAGTATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttgaatctctttctcagttttgttttaactcacattttgtctatggagcagAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGAC
                              aactcac  putative branch site (score: 2)
                                      ttttgtct  CT-rich tract
                     ttttgttttaa  TA-rich tract