Sequence
atgc intronic sequence ATGC exonic sequencegttaaacatcactttgaactcctacgaatatatgccagtatgccatggtttcttaaatccggtttagtcgcagtttttaattgtgaaactgacaaacctttgaacttttctagATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGA
Basic information
| species | Arabidopsis thaliana |
| transcript | AT2G30710.1 |
| intron # | 8 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G30710.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA13G42180.1 (Glycine max), 3'ss of exon 8
-------------------------------------------------------------------gttaaacatcactttgaactcctacgaat-----atatgccagtatgccatggtttcttaaatccggtttagtcgcagtttttaattgtga-aactgacaaacct-ttgaacttttctagATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGA
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gtttgctcataatttttttgtctcaaaagtgcaatagtcttccccagagctgcatgtataactcgtaaattgactgcatatcaagcccgaaggagttgttaatttggtttgagggaattatggagtacaaaaaatttggcccaattttatgcttttgttaactctgatttctgctttatgtaatcagATACCCTTCCATCTTGTCACTCGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAA
upper sequence: AT2G30710.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA12G05350.1 (Glycine max), 3'ss of exon 9
----------------------------gtta-aacatcactttgaactcctacgaatatatgccagtatgcca---tggtttcttaaatccggtttagtcgcag-----tttttaattgtgaaactgacaa-acctttgaacttttctagATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGA
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gtttgcaaggatattcttataactataagtgggaaaattttctcaagaacatacatataattgataacatgacagaatgaaaacattggtctgggataaatatgggatgattttgtgcttttttactaatgatgtctgattatgtaattagATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAA
upper sequence: AT2G30710.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA11G13330.1 (Glycine max), 3'ss of exon 8
-----------------------------gttaaacatcactttgaactccta--cgaatatatgccagtatgccatggtttcttaaatccggtttagtcgcagtttttaattgtgaaactgacaa-acctttgaacttttctagATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGA
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gtttgcaatgatattttgttctcttataaggggggaagttttctcaacatataattgataacttgacagaatggaaacattggtctgagataaattggg-atgattttgtgcttttttactaatgatgtctgattatataattagATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAA
upper sequence: AT2G30710.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA15G03200.1 (Glycine max), 3'ss of exon 8
-----------------------------------------------------------------------gttaaacatca--ctttgaactcctacgaatata-tgccagtatgccatgg--tttcttaaatccggtttagtcgcagtttttaattgtgaaactgacaaacctttgaacttttctagATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGA
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gtttgctctgaattttttctctcaaaagtgcagtagtcttcgccagagctgcatgtataatttgtaaatcgactgcatatcaagccagaaggacttgttaatttagttagagggaattatggagtacaaaaaatttggcccaattttatgcttttgtta--actctgatttctgctttatgtaatc-agATACCCTTCCATCTTGTCACACGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAA
upper sequence: AT2G30710.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 3'ss of exon 8
gttaaacatcactttgaactcctacgaatatatgccagtatgccatggtttcttaaatccggtttagtcgcagtttttaattgtgaa-actgacaaacctttgaacttttctagATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGA
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--------gcaagttgcat--caacagacatacctaactgagatatga---ccttgattggtgcttttatcatttaataagaagaactattgacatgt-ttactgttttgttagATACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86086042|gb|DR381801.1|DR381801EST: AGTTTCTTCAATTTGCTTTCCGGTGGTATAATTGTCTTCTGATTCGTGAG ATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGA
genomic: AGTTTCTTCAATTTGCTTTCCGGTGGTATAATTGTCTTCTGATTCGTGAGgttaaacatc ... acttttctagATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccggtttagtcgcagtttttaattgtgaaactgacaaacctttgaacttttctagATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGA
aactgac putative branch site (score: 2)
cttttct putative PPT
tttttaattgtgaaa TA-rich tract
