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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaatcccgagtctagtggagattatatctctcaatacgaagcgtttttcttacaagtttgttatttctgataaatgtatattggatcacaacagATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGTTGCGAAAGATACAGTTGAATTGGTAGAAGAATCTCAGTCTGAATCAGAA

Basic information

species Arabidopsis thaliana
transcript AT2G28800.4
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125035484|gb|EL107753.1|EL107753
EST:     GCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAG                         ATTTAGACAATTAAAAGAGCAAGAGAAGCGCA
genomic: GCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAGgtaagtgaat ... atcacaacagATTTAGACAATTAAAAGAGCAAGAGAAGCGCA
EST: gi|86079787|gb|DR375544.1|DR375544
EST:     GCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAC                         ATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGT
genomic: GCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAGgtaagtgaat ... atcacaacagATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGT
EST: gi|164175673|gb|ES065146.1|ES065146
EST:     CTGACGATGCTGGCGAAAG                         ATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGT
genomic: CTGACGATGCTGGCGAAAGgtaagtgaat ... atcacaacagATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGT
EST: gi|86079035|gb|DR374792.1|DR374792
EST:     GCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAC                         ATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGT
genomic: GCGGGACGAGCAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAGgtaagtgaat ... atcacaacagATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGT
EST: gi|125137502|gb|EL177357.1|EL177357
EST:     CAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAG                         ATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGA
genomic: CAAAGAGATCTATTGCTCAGCCTGACGATGCTGGCGAAAGgtaagtgaat ... atcacaacagATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgtttttcttacaagtttgttatttctgataaatgtatattggatcacaacagATTTAGACAATTAAAAGAGCAAGAGAAGCGCAGCAAGAAGAACAAGGCGGTTGCGAAAGATACAGTTGAATTGGTAGAAGAATCTCAGTCTGAATCAGAA
                     ttatttctgataaatg  TA-rich tract