1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatattattgtatatgactgtgtttattggtaggatctgagttttattttttccctttttattatgctactgcttatgttaaaccatcctatggttttagGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTAGGTGGTGCAAAGCCAAATATGGATGAAAACGCAAGCAAAATAATAAGT
species | Arabidopsis thaliana |
transcript | AT2G28800.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTNTTTACTG GCTCACAAATAATGTACTTAGTACCEST: gi|125150945|gb|EL183333.1|EL183333
genomic: ATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGgttggtttcc ... atggttttagGCTCACAAATAATGTACTTAGTACC
EST: ACTATCTATTTACTG GCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTEST: gi|86079787|gb|DR375544.1|DR375544
genomic: ACTATCTATTTACTGgttggtttcc ... atggttttagGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
EST: GGACTATCTATTTACTG GCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTEST: gi|86079035|gb|DR374792.1|DR374792
genomic: GGACTATCTATTTACTGgttggtttcc ... atggttttagGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
EST: GTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTG GCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTEST: gi|124922240|gb|EL000549.1|EL000549
genomic: GTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGgttggtttcc ... atggttttagGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
EST: ACTATCTATTTACTG GCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTEST: gi|124971775|gb|EL045512.1|EL045512
genomic: ACTATCTATTTACTGgttggtttcc ... atggttttagGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
EST: CGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTG GCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
genomic: CGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGgttggtttcc ... atggttttagGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
attttttccctttttattatgctactgcttatgttaaaccatcctatggttttagGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTAGGTGGTGCAAAGCCAAATATGGATGAAAACGCAAGCAAAATAATAAGT
tttttattatgcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatattattgtatatgactgtgtttattggtaggatctgagttttattttttccctttttattatgctactgcttatgttaaaccatcctatggttttagGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTAGGTGGTGCAAAGCCAAATATGGATGAAAACGCAAGCAAAATAATAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA