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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgctaaatattttgtccatttacccaccgggaaccatacatctgtttgtgtaacttgttctcactgctaacagGACATCAGAATCTTTCTCACCAATCTGCCTACCAAGATACAACGCTCAGGCCTTTTTGCATGCCTATGTCCACTTCTTTGAT

Basic information

species Arabidopsis thaliana
transcript AT2G28390.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28390.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv06s0004g02820.t01 (Vitis vinifera), 3'ss of exon 8
-----------------gcaagtgctaaatatt-ttgtccatttacccaccgggaaccatacatctgtttgtgtaa-cttgttctc---actgctaacagGACATCAGAATCTTTCTCACCAATCTGCCTACCAAGATACAACGCTCAGGCCTTTTTGCATGCCTATGTCCACTTCTTTGAT
                   | |  || ||| || ||||     |       |   | | |   | ||    ||||| |||||||      || |   ||||||||| ||||||||||||||||| ||||| |||||||| ||  |   ||| |||||  |||| |||||||| |   |||||
atatccttactctgttgaaatggacttaatcttgttgtatgggtggttgtggttgaacttgtttgtggagttgtaatcttgttccatgggcttcatgcagGACATCCGAATCTTTCTCACCAATTTGCCTGCCAAGATATAATCCCATGGCATTTTTATATGCTTATGTCCATTATCTTGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacccaccgggaaccatacatctgtttgtgtaacttgttctcactgctaacagGACATCAGAATCTTTCTCACCAATCTGCCTACCAAGATACAACGCTCAGGCCTTTTTGCATGCCTATGTCCACTTCTTTGAT
                                       ttctcac  putative branch site (score: 2)
                                       ttctcact  CT-rich tract