1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatattatataagttacacaaggttgtttaacttggaaagatgagattgtgttagaatgtatcttatttaaactgaaaccgggtcgatattggattgtagGCGAGTCGCGACGTGACGAGGATGGAAATATTCATGCAACTAGTGAATATTTTGGAGCAGACAATGAAATGTGGAGGAAACTCTAAGACTATTTTGGATG
species | Arabidopsis thaliana |
transcript | AT2G27230.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGTCATCGAAACTCGAGTAGACAAGATTTGGGCTCGCTTCACTGTTGAG GCGAGTCGCGACGTGACGAEST: gi|164018334|gb|ES126925.1|ES126925
genomic: GAGTCATCGAAACTCGAGTAGACAAGATTTGGGCTCGCTTCACTGTTGAGgtatattata ... tggattgtagGCGAGTCGCGACGTGACGA
EST: ACAAGATTTGGGCTCGCTTCACTGTTGAG GCGAGTCGCGACGTGACGAGGATGGAAATATTCATGCAACTAGTGAATATT
genomic: ACAAGATTTGGGCTCGCTTCACTGTTGAGgtatattata ... tggattgtagGCGAGTCGCGACGTGACGAGGATGGAAATATTCATGCAACTAGTGAATATT
attgtgttagaatgtatcttatttaaactgaaaccgggtcgatattggattgtagGCGAGTCGCGACGTGACGAGGATGGAAATATTCATGCAACTAGTGAATATTTTGGAGCAGACAATGAAATGTGGAGGAAACTCTAAGACTATTTTGGATG
ttagaatgtatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattatataagttacacaaggttgtttaacttggaaagatgagattgtgttagaatgtatcttatttaaactgaaaccgggtcgatattggattgtagGCGAGTCGCGACGTGACGAGGATGGAAATATTCATGCAACTAGTGAATATTTTGGAGCAGACAATGAAATGTGGAGGAAACTCTAAGACTATTTTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA