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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagctagcatttagttaactccacaagtttttcttgttttcttttagtcattttgttgagctaagcaaaaaaacatggtttgtttttgaaaagACCGAAGGAGCATTTGTTCAAGGCATCGGGTTTTTCATGATGGAAGAGTACACTACTGATGAGAAGGGGCTTGTGGTGCAACAAGGCACTTGGGACTACA

Basic information

species Arabidopsis thaliana
transcript AT2G27150.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27150.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv18s0041g02430.t01 (Vitis vinifera), 3'ss of exon 8
gttagctagcatttagttaactccacaagtttttcttgtttt-----cttttagtcattttgttgagctaag-caaaaaaacatggtttgtttttgaaaagACCGAAGGAGCATTTGTTCAAGGCATCGGGTTTTTCATGATGGAAGAGTACACTACTGATGAGAAGGGGCTTGTGGTGCAACAAGGCACTTGGGACTACA
 |    ||| || |   |||||   |||  ||| ||| |  |     ||| |  | ||||  |  |  |    | || |  | |  |  |||  |  | |||  |||||||| ||||||||||| || |||||||| ||| ||||||||||||| ||| ||    | || || |||||     ||||||| |||   ||||
-tactgtaggatgtttataactgttcaatgtttccttatccttaaaacttgtgcttatttgatccatatgcctctaatattctttctgagttgctttacagATAGAAGGAGCTTTTGTTCAAGGAATTGGGTTTTTTATGCTGGAAGAGTACACAACTAATTCAGATGGACTGGTGGTCACCGAAGGCACATGGACATACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116388007|gb|EG430599.1|EG430599
EST:     TTATTTATGACTGTGGAAAGAGTCTTAATCCTGCAGTTGATTTAGGACAG                         ACCGAGGGAGCATTTGTTCAAGGCATCGGGTTTTTCATGATGGAAGAGTAC
genomic: TTATTTATGACTGTGGAAAGAGTCTTAATCCTGCAGTTGATTTAGGACAGgttagctagc ... ttttgaaaagACCGAAGGAGCATTTGTTCAAGGCATCGGGTTTTTCATGATGGAAGAGTAC
EST: gi|116388003|gb|EG430595.1|EG430595
EST:     TTATTTATGACTGTGGAAAGAGTCTTAATCCTGCAGTTGATTTAGGACAG                         ACCGAAGGAGCATTTGTTCAAGGCATCGGGTTTTTCATGATGGAAGAGTAC
genomic: TTATTTATGACTGTGGAAAGAGTCTTAATCCTGCAGTTGATTTAGGACAGgttagctagc ... ttttgaaaagACCGAAGGAGCATTTGTTCAAGGCATCGGGTTTTTCATGATGGAAGAGTAC
EST: gi|116388029|gb|EG430621.1|EG430621
EST:     TTATTTATGACTGTGGAAAGAGTCTTAATCCTGCAGTTGATTTAGGACAG                         ACCGAAGGAGCATTTGTTCAAGGCATCGGGTTTTTCATGATGGAAGAGTAC
genomic: TTATTTATGACTGTGGAAAGAGTCTTAATCCTGCAGTTGATTTAGGACAGgttagctagc ... ttttgaaaagACCGAAGGAGCATTTGTTCAAGGCATCGGGTTTTTCATGATGGAAGAGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttagtcattttgttgagctaagcaaaaaaacatggtttgtttttgaaaagACCGAAGGAGCATTTGTTCAAGGCATCGGGTTTTTCATGATGGAAGAGTACACTACTGATGAGAAGGGGCTTGTGGTGCAACAAGGCACTTGGGACTACA
                                        tttgttttt  CT-rich tract
                                        tttgtttttgaaaa  TA-rich tract