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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgacatcttgtaataaagtcacatcagtttctccttattcatttgtttctttctcattttagagttttgaaaacacagGTCGAGGTATTGAGCTGCATTAGGCATCCGAACATGGTTCTACTTCTTGGGGCTTGTCCGGAATGCGGATGTTTAGTCTACGAGTTCATGGCTAATGGGA

Basic information

species Arabidopsis thaliana
transcript AT2G24370.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G24370.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA17G28970.1 (Glycine max), 3'ss of exon 5
------gtaatgacatcttgtaataaagtca-catcagtttctccttattcatttgtttctttctcattttagag------ttttg-----aaaacacagGTCGAGGTATTGAGCTGCATTAGGCATCCGAACATGGTTCTACTTCTTGGGGCTTGTCCGGAATGCGGATGTTTAGTCTACGAGTTCATGGCTAATGGGA
       |    |||| ||     ||  | |  |       |   |  | ||    || | | | || |||| |       |||||     |||  |||||| ||||||||||| |||||||||||||| ||||||||||| || || || || || || || | ||| ||  | || || |||| |||| | || || |
ccacatttgcctacatttttctgcaattttagtactcaacacaaatattacaacaattgcatccacaatttaaaaccatacttttggatgaaaattacagGTTGAGGTATTGAGTTGCATTAGGCATCCAAACATGGTTCTTCTCCTAGGAGCCTGCCCTGAGTACGGCTGCCTTGTATATGAGTACATGTCAAACGGAA

upper sequence: AT2G24370.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA14G18380.1 (Glycine max), 3'ss of exon 10
------gtaatgacatcttgtaataaagtcacatcagtttctccttattcatttg--tttctttctcattttaga-----------gttttgaaaacacagGTCGAGGTATTGAGCTGCATTAGGCATCCGAACATGGTTCTACTTCTTGGGGCTTGTCCGGAATGCGGATGTTTAGTCTACGAGTTCATGGCTAATGGGA
       | ||| ||  ||    || | |    |    || |  | |||||   |   |  |  | || |||| |           || |  | |  |||||| ||||||||||| |||||||||||||| ||||||||||| || || || || || || || | ||| ||| | || || |||  |||| | || || |
atcctaatcatgccacatttgtctacatttttctgcacttttagt-attcaacagaaatattaccacaatttaaaaccatactttggtctgaacattacagGTTGAGGTATTGAGTTGCATTAGGCATCCAAACATGGTTCTCCTCCTAGGAGCCTGCCCTGAGTACGGCTGTCTTGTGTATGAGCACATGTCAAACGGAA

upper sequence: AT2G24370.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA06G08210.1 (Glycine max), 3'ss of exon 9
----------------gtaatgacatcttgtaataaagtcacatcagtttctccttattcatttgtttctttctcattttagagttttg---aaaacacagGTCGAGGTATTGAGCTGCATTAGGCATCCGAACATGGTTCTACTTCTTGGGGCTTGTCCGGAATGCGGATGTTTAGTCTACGAGTTCATGGCTAATGGGA
                 | | ||||  || ||  ||||||  || |  || || |   | |   | ||  |  | |  | | | | |     | | ||||||| ||||| |||||||||||  ||||||| ||||||||||| || || || || ||||| |||| ||| ||| |||| || |||| |||||| ||||| |
catcctctacatgacttttaagacaatttttataaaagtcg-ataaacttatcatatatgacacgatttgtgattagatgatattgtaatgcacatcacagGTTGAGGTGTTGAGCTGCATACGGCATCCAAACATGGTTCTCCTCCTAGGAGCGTGTCCAGAATACGGGTGTCTAGTGTATGAGTACATGGCAAATGGAA

upper sequence: AT2G24370.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA04G08140.1 (Glycine max), 3'ss of exon 8
---------------gtaatgacatcttg-taataaagtcacatcagtttctccttat-tcatttgtttctttctcattttagagttttg-aaaacacagGTCGAGGTATTGAGCTGCATTAGGCATCCGAACATGGTTCTACTTCTTGGGGCTTGTCCGGAATGCGGATGTTTAGTCTACGAGTTCATGGCTAATGGGA
                | || |  || |  ||   |         |     |   |||  ||| | |   |   |   || |  ||  || | |  |||||| ||||| |||||||||||  ||||||| ||||||||||| || || || || ||||| |||| ||| ||| |||| || |||| |||||| ||||| |
ccaaacattcaagtgatgatcaagtcatactagccagaaagggctaaaacatttgtatgccatgtttggttgaattggttgaatgtaatgcacattacagGTTGAGGTGTTGAGCTGCATACGGCATCCAAACATGGTTCTCCTCCTAGGTGCGTGTCCAGAATACGGGTGTCTAGTGTATGAGTACATGGCAAATGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtttctccttattcatttgtttctttctcattttagagttttgaaaacacagGTCGAGGTATTGAGCTGCATTAGGCATCCGAACATGGTTCTACTTCTTGGGGCTTGTCCGGAATGCGGATGTTTAGTCTACGAGTTCATGGCTAATGGGA
           ttattcatttgttt  TA-rich tract