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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcattactttattgatatgagaagctaaaggagcttgtttctgttaaatttatcctttcagttaaacattgtcaaatatcttgcagATTGTTGACCTCGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACTTCAATGGCAG

Basic information

species Arabidopsis thaliana
transcript AT2G24200.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829652|gb|CK119336.1|CK119336
EST:     CTTGTAACCAAGGCGTCGACAAG                         ATTGTTGACCTCGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACT
genomic: CTTGTAACCAAGGCGTCGACAAGgtattgcatt ... tatcttgcagATTGTTGACCTCGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACT
EST: gi|116409488|gb|EG452080.1|EG452080
EST:     TAACACTCGCAGATGCTCTAGTGTATGCTTGTAACCAAGGCGTCGACAAG                         ATTGTTGACCTCGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACT
genomic: TAACACTCGCAGATGCTCTAGTGTATGCTTGTAACCAAGGCGTCGACAAGgtattgcatt ... tatcttgcagATTGTTGACCTCGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACT
EST: gi|116409481|gb|EG452073.1|EG452073
EST:     TAACACTCGCAGATGCTCTAGTGTATGCTTGTAACCAAGGCGTCGACAAG                         ATTGTTGGCCTCGCTACTTTGACCGGGGCCTGTGTTATTGCCCTTGGAACT
genomic: TAACACTCGCAGATGCTCTAGTGTATGCTTGTAACCAAGGCGTCGACAAGgtattgcatt ... tatcttgcagATTGTTGACCTCGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACT
EST: gi|86087145|gb|DR382904.1|DR382904
EST:     TGTATGCTTGTAACCAAGGCGTCGACAAG                         ATTGTTGMCCTCGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACT
genomic: TGTATGCTTGTAACCAAGGCGTCGACAAGgtattgcatt ... tatcttgcagATTGTTGACCTCGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACT
EST: gi|116409618|gb|EG452210.1|EG452210
EST:     TAACACTCGCAGATGCTCTAGTGTATGCTTGTAACCAAGGCGTCGACAAG                         ATTGTTGACCTCGCTACTTTGACCG
genomic: TAACACTCGCAGATGCTCTAGTGTATGCTTGTAACCAAGGCGTCGACAAGgtattgcatt ... tatcttgcagATTGTTGACCTCGCTACTTTGACCG
EST: gi|116409637|gb|EG452229.1|EG452229
EST:     TAACACTCGCAGATGCTCTAGTGTATGCTTGTAACCAAGGCGTCGACAAG                         ATTGTTGACCTCGCTACTTTGACCG
genomic: TAACACTCGCAGATGCTCTAGTGTATGCTTGTAACCAAGGCGTCGACAAGgtattgcatt ... tatcttgcagATTGTTGACCTCGCTACTTTGACCG
EST: gi|124766773|gb|EH856903.1|EH856903
EST:     CACTCGCAGATACTCTAGTGTATGCTTGTAACCAAGGCGTCGACAAG                         ATTGTTGACCTCGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACT
genomic: CACTCGCAGATGCTCTAGTGTATGCTTGTAACCAAGGCGTCGACAAGgtattgcatt ... tatcttgcagATTGTTGACCTCGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttgtttctgttaaatttatcctttcagttaaacattgtcaaatatcttgcagATTGTTGACCTCGCTACTTTGACCGGGGCCTGTGTTATTGCTCTTGGAACTTCAATGGCAG
      tttctgttaaatttat  TA-rich tract