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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaatacattcttactgcttaagacttttcgttccgtcttcacttaactaggaaaagatatagactaaaggttatcattgcagGTGGCTAGAAAAATGAAGGACGAAGAAGGATTCTACTACCCTCACAATCTTGACTTTAGAGGCCGTGCATACCCAATGCATCCTCATCTGAATCATCTGA

Basic information

species Arabidopsis thaliana
transcript AT2G24120.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G24120.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA06G24890.1 (Glycine max), 3'ss of exon 1
--------------gtaagaaatacattcttactgcttaagacttttcgttccgtcttcacttaactaggaaaagatatagactaaaggttatcattg-cagGTGGCTAGAAAAATGAAGGACGAAGAAGGATTCTACTACCCTCACAATCTTGACTTTAGAGGCCGTGCATACCCAATGCATCCTCATCTGAATCATCTGA
              | |  || |  |   |||   | |   |   |   | || | ||    ||  |  | ||  || || |  |||     || |   ||||||||  |||||||||| || || ||||| || || || || ||||||||||||||  | ||| | ||||| || |||||||||||| |||||||| |  
taattgaataatctgaactaagtttaccattatcacattcaatact--atcccatgtttcactagttgagcaataatttaaaggaaatacattcttaaacagGTGGCACGAAAAATGAAAGATGAGGAAGGCTTTTATTATCCACACAATCTTGACTTCCGTGGCAGAGCATATCCTATGCATCCTCATTTGAATCATTTAG

upper sequence: AT2G24120.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv11s0037g00630.t01 (Vitis vinifera), 3'ss of exon 8
--------------gtaagaaatacattcttactgctt-aagacttttcgttccgtcttcacttaactaggaaaagatatagactaaaggttatcattgcagGTGGCTAGAAAAATGAAGGACGAAGAAGGATTCTACTACCCTCACAATCTTGACTTTAGAGGCCGTGCATACCCAATGCATCCTCATCTGAATCATCTGA
               |     ||  |||   |   ||  ||| ||    |  |  | |||| ||   || |      |    |  | |     |     ||||||||| |||||||||| || |||||||| || || || |||||||||||||| ||| |||||||||| |||||||||||||| ||| ||||||||||||
tttcctaatgcagatttgattatgtattgccatgactggaagtctcgaagaactttgttcatttg--taagcttcagtgctaagcagattcattttgaacagGTGGCTCGAAAAATGAAAGATGAAGAAGGCTTTTATTATCCTCACAATCTTGATTTTCGAGGCCGTGCGTACCCAATGCATCCACATTTGAATCATCTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgttccgtcttcacttaactaggaaaagatatagactaaaggttatcattgcagGTGGCTAGAAAAATGAAGGACGAAGAAGGATTCTACTACCCTCACAATCTTGACTTTAGAGGCCGTGCATACCCAATGCATCCTCATCTGAATCATCTGA
                                  gactaaa  putative branch site (score: 2)
                        aaaagatata  TA-rich tract