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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaacagtcatcattctgtagctacacgttatggccttataatcattggttcttactccaaatttgaatgctcttaaactatagGATTCATGCAACCGAAAAAGTAATCAGCAAAATCTGGGTACCATAAAGTCGTCCAACTTATGCACTGAAATCATTGAGTACACTAGTCCAACAGAAACTG

Basic information

species Arabidopsis thaliana
transcript AT2G21790.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21790.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 3'ss of exon 8
------------------------gtaagtaacagtcatcatt----ctgtagctacacgttatggccttataatcattg----gttcttact-ccaaatttgaatgctcttaaa---ctatagGATTCATGCAACCGAAAAAGTAATCAGCAAAATCTGGGTACCATAAAGTCGTCCAACTTATGCACTGAAATCATTGAGTACACTAGTCCAACAGAAACTG
                        | ||| |  | |     ||    |      | | |   ||   ||  |    || |    ||||  | |    | |  ||||||||||      | | ||||| |||||||  | |||||||| ||||| ||| |||| || || || || || |||||||||||||| || ||||||||||| || || || |||||||
gtaaatttggtagcaaaattagtagcaaggagtacttgattttggacccaagattcctccaaatatgctgctggctatagtcaggttccaagtattcattccgaatgctcttgttgtcccacagGATACATGCAATAGGAAAAGTAACCAGCAGAATTTGGGCACAATTAAATCTTCAAACTTATGCACTGAGATAATTGAGTACACAAGCCCTACTGAAACTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggccttataatcattggttcttactccaaatttgaatgctcttaaactatagGATTCATGCAACCGAAAAAGTAATCAGCAAAATCTGGGTACCATAAAGTCGTCCAACTTATGCACTGAAATCATTGAGTACACTAGTCCAACAGAAACTG
                    ttcttac  putative branch site (score: 2)
                                       tgctctt  putative PPT
       ttataatcatt  TA-rich tract