1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgcattcagagtttattgataattgacaaaacaaaaactgtaatggaattgagagacaaatgcatatgattgttcatctcttaattttttttttcagGTTGGAGCTGCAAAAGAGACAAAGAAAGAGGAACAAGAGAAGAAAGACGAGCCCAAGTTTCAAGCTTTCTCTGGGAAGAAGTATTCATTGAGGGGTTGAT
species | Arabidopsis thaliana |
transcript | AT2G21270.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGTATTTGGGGCCAACGCAAACCGTGCTCCAAAAGAAGCTGCTCCTAAA GTTGGAGCTGCAAAAGAGACAAAGAAAGAGGAACAGGAGAAGAATGACGAGEST: gi|125037137|gb|EL109406.1|EL109406
genomic: TTGTATTTGGGGCTAACGGAAACCGTGCTCCAAAAGAAGCTGCTCCGAAAgtacgcattc ... tttttttcagGTTGGAGCTGCAAAAGAGACAAAGAAAGAGGAACAAGAGAAGAAAGACGAG
EST: TTGTATTTGGGGCTAACGGAAACCGTGCTCCAAAAGAAGCTGCTCCGAAA GTTGGAGCTGCAAAAGAGACAAAGAAAGAGGAACAAGAG
genomic: TTGTATTTGGGGCTAACGGAAACCGTGCTCCAAAAGAAGCTGCTCCGAAAgtacgcattc ... tttttttcagGTTGGAGCTGCAAAAGAGACAAAGAAAGAGGAACAAGAG
atggaattgagagacaaatgcatatgattgttcatctcttaattttttttttcagGTTGGAGCTGCAAAAGAGACAAAGAAAGAGGAACAAGAGAAGAAAGACGAGCCCAAGTTTCAAGCTTTCTCTGGGAAGAAGTATTCATTGAGGGGTTGAT
tcttaat putative branch site (score: 3)
ttcatctcttaatttt CT-rich tract
ttcatctcttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcattcagagtttattgataattgacaaaacaaaaactgtaatggaattgagagacaaatgcatatgattgttcatctcttaattttttttttcagGTTGGAGCTGCAAAAGAGACAAAGAAAGAGGAACAAGAGAAGAAAGACGAGCCCAAGTTTCAAGCTTTCTCTGGGAAGAAGTATTCATTGAGGGGTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT