1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtttgcaacaacaagaacacaaattcgatttccaaacaacttagtaatggttatataagactcttttaagtgtcgtttcattttctgtttgcagAACTCAGCAAAACATGGACAATAAAAATCCCATTGATGTGGCCAGGCTAAACAATCAGCTAGATGTGGTGAAACTACTTGAGAAGGACGCTTTCCTCTGA
species | Arabidopsis thaliana |
transcript | AT2G17390.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATGGAAGGAAAGAGTGTGTAAGCCTCCTCCTAGAGAATGGTGCTGCAGT AACTCAGCAAAACATGGACAATAAAAATCCCATTGATGTGGCCAGGCTAAAEST: gi|125025966|gb|EL098235.1|EL098235
genomic: TATGGAAGGAAAGAGTGTGTAAGCCTCCTCCTAGAGAATGGTGCTGCAGTgtaagtttgc ... ctgtttgcagAACTCAGCAAAACATGGACAATAAAAATCCCATTGATGTGGCCAGGCTAAA
EST: TATGGAAGGAAAGAGTGTGTAAGCCTCCTCCTAGAGAATGGTGCTGCAGT AACTCAGCAAAACATGGACAATAAAAATCCCATTGATGEST: gi|124885458|gb|EH964360.1|EH964360
genomic: TATGGAAGGAAAGAGTGTGTAAGCCTCCTCCTAGAGAATGGTGCTGCAGTgtaagtttgc ... ctgtttgcagAACTCAGCAAAACATGGACAATAAAAATCCCATTGATG
EST: TATGGAAGGAAAGAGTGTGTAAGCCTCCTCCTAGAGAATGGTGCTGCAGT AACTCAGCAAAACATGGACAATAAAAATCCCAEST: gi|125254443|gb|EL268528.1|EL268528
genomic: TATGGAAGGAAAGAGTGTGTAAGCCTCCTCCTAGAGAATGGTGCTGCAGTgtaagtttgc ... ctgtttgcagAACTCAGCAAAACATGGACAATAAAAATCCCA
EST: CCTCCTAGAGAATGGTGCTGCAGT AACTCAGCAAAACATGGACAATAAAAATCCCATTGATGTGGCCAGGCTAAAEST: gi|125142096|gb|EL179597.1|EL179597
genomic: CCTCCTAGAGAATGGTGCTGCAGTgtaagtttgc ... ctgtttgcagAACTCAGCAAAACATGGACAATAAAAATCCCATTGATGTGGCCAGGCTAAA
EST: TATGGAAGGAAAGAGTGTGTAAGCCTCCTCCTAGAGAATGGTGCTGCAGT AACTCAGCAAAACATGGEST: gi|125296067|gb|EL310152.1|EL310152
genomic: TATGGAAGGAAAGAGTGTGTAAGCCTCCTCCTAGAGAATGGTGCTGCAGTgtaagtttgc ... ctgtttgcagAACTCAGCAAAACATGG
EST: TATGGAAGGAAAGAGTGTGTAAGCCTCCTCCTAGAGAATGGTGCTGCAGT AACTCAGCAAAACATGGACAATAAAAAATCCCA
genomic: TATGGAAGGAAAGAGTGTGTAAGCCTCCTCCTAGAGAATGGTGCTGCAGTgtaagtttgc ... ctgtttgcagAACTCAGCAAAACATGGACAATAAAAA-TCCCA
cttagtaatggttatataagactcttttaagtgtcgtttcattttctgtttgcagAACTCAGCAAAACATGGACAATAAAAATCCCATTGATGTGGCCAGGCTAAACAATCAGCTAGATGTGGTGAAACTACTTGAGAAGGACGCTTTCCTCTGA
tttcattttctgttt CT-rich tract
taatggttatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttgcaacaacaagaacacaaattcgatttccaaacaacttagtaatggttatataagactcttttaagtgtcgtttcattttctgtttgcagAACTCAGCAAAACATGGACAATAAAAATCCCATTGATGTGGCCAGGCTAAACAATCAGCTAGATGTGGTGAAACTACTTGAGAAGGACGCTTTCCTCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT