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gttcgtttttccagccttgcttgttctggaagatatttatgctcatttatttgaatctctcaacgtgtttgtatatgcagGGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCCAAGAAGATAACAGGAAACTCATCTCGTTGAAGTTAGAGTCAGCATTGCG
species | Arabidopsis thaliana |
transcript | AT2G05830.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTTTGATATGACTCCAGCAGAGCTGATTGCAGGAATCATAACCGAGAAA GGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCCEST: gi|164030996|gb|ES175249.1|ES175249
genomic: CTTTTGATATGACTCCAGCAGAGCTGATTGCAGGAATCATAACCGAGAAAgttcgttttt ... gtatatgcagGGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCC
EST: AGAGCTGATTGCAGGAATCATAACCGAGAAA GGG-TCATAACAAAGAATGGCAATGATACATTTGEST: gi|86080100|gb|DR375857.1|DR375857
genomic: AGAGCTGATTGCAGGAATCATAACCGAGAAAgttcgttttt ... gtatatgcagGGGGTCATAACAAAGAATGGCAATGATACATTTG
EST: CTTTTGATATGACTCCAGCAGAGCTGATTGCAGGAATCATAACCGAGAAA GGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCCEST: gi|116380079|gb|EG422671.1|EG422671
genomic: CTTTTGATATGACTCCAGCAGAGCTGATTGCAGGAATCATAACCGAGAAAgttcgttttt ... gtatatgcagGGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCC
EST: CTTTTGATATGACTCCAGCAGAGCTGATTGCAGGAATCATAACCGAGAAA GGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCC
genomic: CTTTTGATATGACTCCAGCAGAGCTGATTGCAGGAATCATAACCGAGAAAgttcgttttt ... gtatatgcagGGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCC
ctggaagatatttatgctcatttatttgaatctctcaacgtgtttgtatatgcagGGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCCAAGAAGATAACAGGAAACTCATCTCGTTGAAGTTAGAGTCAGCATTGCG
tcatttatttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtttttccagccttgcttgttctggaagatatttatgctcatttatttgaatctctcaacgtgtttgtatatgcagGGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCCAAGAAGATAACAGGAAACTCATCTCGTTGAAGTTAGAGTCAGCATTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG