1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtacttccactttccattcttcaactggtgtctgtcatttactggaatataatcttgagtcctgaccatgatgaatcttgttgtgtgggttaagGTGGTTGGCGAATCTGGTCTGTTTACACCAGATGACATTGCCTATGTACAAGCAGCCGGAGTCAAAGCA
species | Arabidopsis thaliana |
transcript | AT2G04400.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAGGAGAGCATGGTAGACAAATCCGTGAGAGAGACATGATT GTGGTTGGCGAATCTGGTCTGTTTACACCAGATGACATTGCCTATGTACAAEST: gi|124858313|gb|EH942750.1|EH942750
genomic: GAAGGAGAGCATGGTAGACAAATCCGTGAGAGAGACATGATTgtaagtactt ... gtgggttaagGTGGTTGGCGAATCTGGTCTGTTTACACCAGATGACATTGCCTATGTACAA
EST: TTCTTGAAGGAGAGCATGGTAGACAAATCCGTGAGAGAGACATGATT GTGGTTGGCGAATCTGGTCTGTTTACACCAGA
genomic: TTCTTGAAGGAGAGCATGGTAGACAAATCCGTGAGAGAGACATGATTgtaagtactt ... gtgggttaagGTGGTTGGCGAATCTGGTCTGTTTACACCAGA
tactggaatataatcttgagtcctgaccatgatgaatcttgttgtgtgggttaagGTGGTTGGCGAATCTGGTCTGTTTACACCAGATGACATTGCCTATGTACAAGCAGCCGGAGTCAAAGCA
tcctgac putative branch site (score: 2)
aatataatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacttccactttccattcttcaactggtgtctgtcatttactggaatataatcttgagtcctgaccatgatgaatcttgttgtgtgggttaagGTGGTTGGCGAATCTGGTCTGTTTACACCAGATGACATTGCCTATGTACAAGCAGCCGGAGTCAAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG