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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttgcttctctttgaagcatgctctttgcttcacttcttctttaatccataacaaaattttatgttctcaattgttttcattctcagtttccttccttgctgtaaatgtagGCCTACGTTGGCATTCACGAGCCCAAGACTTTAGATGAGGCTGATTTAGCTCGCAAAAGGCTAATATTTGACGAATTCTTTTACCTACAG

Basic information

species Arabidopsis thaliana
transcript AT2G01440.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01440.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv01s0011g04880.t01 (Vitis vinifera), 3'ss of exon 8
-gtaagtcttgcttctctttgaagcatgctctttgcttcacttcttctttaatccataacaaaattttatgttctcaattgttttcattctcagtttccttccttgctgtaaatgtagGCCTACGTTGGCATTCACGAGCCCAAGACTTTAGATGAGGCTGATTTAGCTCGCAAAAGGCTAATATTTGACGAATTCTTTTACCTACAG
  ||    |||  ||||||    |  | || ||    ||| |||  ||  |||         | ||  ||||| ||     |||  | |   |  |   |||  || |   ||||||||| || || || |||||| |||| |||  |||| | |||||||||||||||||||||||| | |||||||| || |||||||| || |||
catattgtttgtctctcttgcttgtgt-ctattaatatcatttcccctc-aat---------atttacatgttttc-----tttgaagtgctaaatgttttc--tgttaccaatgtagGCTTATGTGGGGATTCACCAGCCAAAGGATTTAAAAGAGGCTGATTTAGCTCGCAAAAGGTTGATATTTGATGAGTTCTTTTATCTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttatgttctcaattgttttcattctcagtttccttccttgctgtaaatgtagGCCTACGTTGGCATTCACGAGCCCAAGACTTTAGATGAGGCTGATTTAGCTCGCAAAAGGCTAATATTTGACGAATTCTTTTACCTACAG
                               tttccttccttgctgt  CT-rich tract
             aattgtttt  TA-rich tract