1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaataattcggctcatctcgaaagcgcagaacaaatcttaaatttcacaggcttgggtaaaatggtttgaaatgtgttttgttcttgtgcaatgattaagGTTTTGAACGAGTGTGTGGAAGCAGAAGCATGGCTGCGGGAGAAGCAGCAGCAGCAGGACACGCTTCCCAAGTATGCCACACCGGCTCTCTTGTCAGCTG
species | Arabidopsis thaliana |
transcript | AT1G79920.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTCTAATGATCCCAAGTTTGATCACATTGAATTGGACAGAGAAGCAAAAEST: gi|125064194|gb|EL131904.1|EL131904
genomic: GTCTAATGATCCCAAGTTTGATCACATTGAATTGG-CAGAGAAGCAAAA
EST: GATCACATTGAATTGGCAGAGAAGTCAAAAEST: gi|125218483|gb|EL232566.1|EL232566
genomic: GATCACATTGAATTGGCAGAGAAG-CAAAA
EST: CAAGTTTGATCACATTGAATTGGCAGAGAAGCAAAA
genomic: CAAGTTTGATCACATTGAATTGGCAGAGAAGCAAAA
cacaggcttgggtaaaatggtttgaaatgtgttttgttcttgtgcaatgattaagGTTTTGAACGAGTGTGTGGAAGCAGAAGCATGGCTGCGGGAGAAGCAGCAGCAGCAGGACACGCTTCCCAAGTATGCCACACCGGCTCTCTTGTCAGCTG
aatgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataattcggctcatctcgaaagcgcagaacaaatcttaaatttcacaggcttgggtaaaatggtttgaaatgtgttttgttcttgtgcaatgattaagGTTTTGAACGAGTGTGTGGAAGCAGAAGCATGGCTGCGGGAGAAGCAGCAGCAGCAGGACACGCTTCCCAAGTATGCCACACCGGCTCTCTTGTCAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG