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gtaagtagaactttaaagaaaatataaccatcctgctcaaagtgaagtaaaacccgtaaactgaaaacatcttatttcataattttcattggccactagGTGGATCCATCTGGCTCTTATTTCTCATGGAAAGCTTCTGCAATGGGAAAGAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAG
species | Arabidopsis thaliana |
transcript | AT1G79210.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTCCACAACTGTATCAA GTGGATCCATCTGGCTTTTATTTTTCATGGAAAGCTTTTGCAATGGGAAAGEST: gi|116484724|gb|EG527316.1|EG527316
genomic: GGTCCACAACTGTATCAAgtaagtagaa ... tggccactagGTGGATCCATCTGGCTCTTATTTCTCATGGAAAGCTTCTGCAATGGGAAAG
EST: GGTCCACAACTGTATCAA GTGGATCCATCTGGCTCTTATTTCTCATGGAAAGCTTCTGCAATGGGAAAGEST: gi|86065886|gb|DR361643.1|DR361643
genomic: GGTCCACAACTGTATCAAgtaagtagaa ... tggccactagGTGGATCCATCTGGCTCTTATTTCTCATGGAAAGCTTCTGCAATGGGAAAG
EST: TGATGACAAGGGTCCACAACTGTATCAA GTGGATCCATCTGGCTCTTATTTCTCATGGAAAGCTTCTGCAATGGGAAAGEST: gi|47831532|gb|CK121216.1|CK121216
genomic: TGATGACAAGGGTCCACAACTGTATCAAgtaagtagaa ... tggccactagGTGGATCCATCTGGCTCTTATTTCTCATGGAAAGCTTCTGCAATGGGAAAG
EST: TTTCTCTACTGGTGGCTGGGTATGATGACAAGGGTCCACAACTGTATCAA GTGGATCCATCTGGCTCTTATTTCTCATGGAAAGCTTCTGCAATGGGAAAG
genomic: TTTCTCTACTGGTGGCTGGGTATGATGACAAGGGTCCACAACTGTATCAAgtaagtagaa ... tggccactagGTGGATCCATCTGGCTCTTATTTCTCATGGAAAGCTTCTGCAATGGGAAAG
aagtaaaacccgtaaactgaaaacatcttatttcataattttcattggccactagGTGGATCCATCTGGCTCTTATTTCTCATGGAAAGCTTCTGCAATGGGAAAGAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAG
ttttcatt CT-rich tract
aaaacatcttatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagaactttaaagaaaatataaccatcctgctcaaagtgaagtaaaacccgtaaactgaaaacatcttatttcataattttcattggccactagGTGGATCCATCTGGCTCTTATTTCTCATGGAAAGCTTCTGCAATGGGAAAGAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG