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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattccatttgcttgagtcaagcttaaagtttctctggttttactggttagattattgttgagttagtttattgaactgtttcagGACAGTAAAGTACCATGAACCTGAGTATTGGAAATTTGGAGAGGATGGTAACAAATACTTTCGACATGCTACAGGACAGATCTATGCCATCTCCAAGGAT

Basic information

species Arabidopsis thaliana
transcript AT1G77810.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G77810.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os02g35870.1 (Oryza sativa), 3'ss of exon 8
gtaat-tccatttgcttgagtcaagcttaaagtttctctggttttactggttagattattg-ttgagttagtttattgaactgtttcagGACAGTAAAGTACCATGAACCTGAGTATTGGAAATTTGGAGAGGATGGTAACAAATACTTTCGACATGCTACAGGACAGATCTATGCCATCTCCAAGGAT
||||  |  | |  | |   |  |  || || |||  || ||         || ||   || ||||  | | |  ||  |    | |||||  || |||||||||||||||||||| ||||||||||| ||||| || ||||||||||| || |||||||| || ||||| || || || || || || 
gtaacgttaactcccctatcttgaaatttaaatttgacttgtagcttgaagtaaatgtctgcttgaactggctcctttca----tacagGAATGTGAAGTACCATGAACCTGAGTACTGGAAATTTGGGGAGGAAGGGAACAAATACTTCCGTCATGCTACTGGGCAGATATACGCGATTTCAAAAGAC

upper sequence: AT1G77810.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G070708_T02 (Zea mays), 3'ss of exon 8
---gtaattccatttgcttgagtcaagcttaaagtttctctggttttactggttagattattgttgagttagtttattgaactgtttcagGACAGTAAAGTACCATGAACCTGAGTATTGGAAATTTGGAGAGGATGGTAACAAATACTTTCGACATGCTACAGGACAGATCTATGCCATCTCCAAGGAT
    |  || | | | |     |  | | | ||  |||    | |  | | | ||||    || |   | |   |  |  | |  |  ||||  || |||||||||||||||||||| ||||||||||| ||||| || || || ||||| || ||||||||||| ||||| |||||||| || || |||
gtaatgtttacttctacactgttacaacatgaa--ttcaagcgctagatttgatagaggcctgct---tgaacctgctctattcatatagGAATGTGAAGTACCATGAACCTGAGTACTGGAAATTTGGGGAGGAAGGAAATAAGTACTTCCGTCATGCTACAGGGCAGATATATGCCATTTCGAAAGAT

upper sequence: AT1G77810.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G013079_T01 (Zea mays), 3'ss of exon 8
----------gtaattccatttgc-ttgagtcaagcttaaagtt--tctctggttttactggttagattattgttgagttagtttattgaactgtttcagGACAGTAAAGTACCATGAACCTGAGTATTGGAAATTTGGAGAGGATGGTAACAAATACTTTCGACATGCTACAGGACAGATCTATGCCATCTCCAAGGAT
           |  ||   | | |  ||   ||| | | |  |    | || | || |    |||  | |    ||  | |   |  |  | |  |  ||||  || |||||||||||||||||||| ||||||||||| ||||| || || |||||||| || ||||| || || ||||| |||||||| || || |||
atgacaagtaatgtttgtttctacactgttacaaacatgagttcagacactagattgaagtattaattgaggcctgcttgaaccttctctattcatatagGAATGTTAAGTACCATGAACCTGAGTACTGGAAATTTGGGGAGGAAGGAAATAAATACTTCCGTCATGCCACGGGGCAGATATATGCCATTTCGAAAGAT

upper sequence: AT1G77810.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G133613_T01 (Zea mays), 3'ss of exon 8
--gtaattccatttgcttg------agtcaagcttaaagtttctctggttttactggttagattattgttga-------gttagtttattgaactgtttcagGACAGTAAAGTACCATGAACCTGAGTATTGGAAATTTGGAGAGGATGGTAACAAATACTTTCGACATGCTACAGGACAGATCTATGCCATCTCCAAGGAT
   ||| | | | ||          ||   ||| |     ||   | ||   | |       ||  | ||||       |||   || ||   |    ||||||  |  || |||||||| |||||||  ||||| || |||||||| || ||||| ||||| || || || || || ||||| || |||||||||||||| 
gtataaattcctctgaaaaaaaagcagcgcagcattcgaattgaatcgtcgaaataccagccttcgttttgacatacatgttttctttttcccccacatcagGAATGCGAAATACCATGAGCCTGAGTTCTGGAAGTTCGGAGAGGACGGGAACAAGTACTTCCGCCACGCCACGGGGCAGATATACGCCATCTCCAAGGAC

upper sequence: AT1G77810.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv07s0031g03090.t01 (Vitis vinifera), 3'ss of exon 8
-------------------------gtaattccatttgcttgagtcaagcttaaagttt-ctctggttttactgg---ttagattattgttgagttagtttattgaactgttt-cagGACAGTAAAGTACCATGAACCTGAGTATTGGAAATTTGGAGAGGATGGTAACAAATACTTTCGACATGCTACAGGACAGATCTATGCCATCTCCAAGGAT
                         |  |       | ||||| |          |||  || ||||    ||     ||  ||| || |||  ||  ||  ||    ||| | |||||| || ||||| ||||||||||| || ||||||||||||||||| || || || |||||||| ||||| || || ||||| ||||||||||| ||||||
gtaagtcctactagctcttaatgaagagaacagggatccttgatttggttcctgggttgactatggtgaatctcaattttcaattcttcttgctttctttctttc--ttgtctgcagGACTGTGAAGTATCATGAACCTGAATACTGGAAATTTGGAGAGGAGGGGAATAAGTACTTTCGGCATGCAACCGGGCAGATTTATGCCATCTCAAAGGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164135385|gb|EL973281.1|EL973281
EST:     TTGGTTGTATGAAGTCAGGGCCTGTTCTTGCTCAGAA                         GACAGTAAAGTACCATGAACCTGAGTATTGGAAATTTGGAGAGGATGGTAA
genomic: TTGGTTGTATGAAGTCAGGGCCTGTTCTTGCTCAGAAgtaattccat ... actgtttcagGACAGTAAAGTACCATGAACCTGAGTATTGGAAATTTGGAGAGGATGGTAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctctggttttactggttagattattgttgagttagtttattgaactgtttcagGACAGTAAAGTACCATGAACCTGAGTATTGGAAATTTGGAGAGGATGGTAACAAATACTTTCGACATGCTACAGGACAGATCTATGCCATCTCCAAGGAT
                                              ctgtttc  CT-rich tract
                 ttagattatt  TA-rich tract