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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattcatgccgtatgaatctctatttactgtttgtaatatacagcgtaacagacaagttattcatcctaaacgtaattgggtaacgttggttcttgatattacagTGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAG

Basic information

species Arabidopsis thaliana
transcript AT1G76720.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G76720.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA10G37020.1 (Glycine max), 3'ss of exon 5
gtatgattcatgccgtatgaatctctatttactgtttgtaatatacagcgtaacagacaagttattcatcctaaacgtaattgggtaacgttggttcttgatattacagTGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAG
 | | |||  ||  |  | || || | |  ||  | ||    ||   || |  |     ||| ||   |  |  |  |   || ||    ||  || |||||||| |||||| |||||  | || ||| | ||  |    ||| |||||||| | || ||||||||||||||||||||||||||   ||| |||||||||
-ttttattagtgttgcctaaaactgt-tgcacaatctgcttaat---gcttttcttgtgagtaatg-gtgttgtat-tgtctgagt--ttttattttttgatatttcagTGGTGAAGGAATTCCCGATTTGTTATTACTATTGATTCAATGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAG

upper sequence: AT1G76720.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA20G30590.1 (Glycine max), 3'ss of exon 4
gtatgattcatgccgtatgaatctctatttactgtttgtaatatacagcgtaacagacaagttattcatcctaaacgtaattgggtaacgttggttcttgatattacagTGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAG
   | |||  ||  |  | || || | |  ||  | ||    ||   || |  |     ||| | |  |  |  |  |   || ||    ||  || || ||||| ||| || |||||  | || ||| | ||  |    ||| |||||||| | || ||||||||||||||||||||||||||   ||| |||||||||
--tttattagtgttgcctaaaactgt-tgcacaatctgcttaat---gcttttcctgtgagtgaatggtgttgtat-tgtctgagt--ttttattttttaatatttcagCGGTGAAGGAATTCCCGATTTGTTATTACTATTGATTCAATGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAG

upper sequence: AT1G76720.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv18s0076g00310.t01 (Vitis vinifera), 3'ss of exon 5
gtatgattcatgccgtatgaatctctatttactgt---ttgtaatatacagcgtaacagacaagtt---------attcatcctaaacgtaattgggtaacgtt---ggttcttgatattacagTGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAG
||||   ||||  | | |   |||    ||  | |   ||||   |  |     ||| || || |          ||| ||    ||   |||    | |  ||   | ||  ||    |||||||| |||||  ||||||| || ||||| |  |||||||| ||| ||||||||||||||||||||||||| |||||       |||||||||
gtatttctcatagcctctatgtctacccttgttatatcttgttccaggctcttcaactgaaaactctacaaaacgatttatttacaagccaatgtcctgatattttggattggtggatgtacagTGGTGAAGGCATCCCAGACCTATTGCTATTATTGGTTCATTGGACTCAGAAAACAATGGTTGAGAAACTCACATACAGCAGTGAAGTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacaagttattcatcctaaacgtaattgggtaacgttggttcttgatattacagTGGAGAAGGGGTCCCAGATCTCTTGCTGTGGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGAAACTTACATATGTTGACGAAGTGCAG
                                           ttgatatta  TA-rich tract