Sequence
atgc intronic sequence ATGC exonic sequencegtaagccttacagtagtttgcttattcttcttgagtttagtgcatattttggttactccactcttttttttttttttaataacatcattaatcatctctgatgggatacttgatttcgttaaaatgtagGCAAAAATGGGTATGACAGATGAATTTGAAACTTCATTACAAGTTCTTCGAGGATTTGAGACTGATATTACCGTTGAAGTTAATGAAATCAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G75220.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G75220.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA14G08070.1 (Glycine max), 3'ss of exon 8
gtaagccttacagtagtttgcttattcttcttgagtttagtgcatattttggttactccactcttttttttttttttaataacatcattaatcatctctgatgggatacttgatttcgttaaaatgtagGCAAAAATGGGTATGACAGATGAATTTGAAACTTCATTACAAGTTCTTCGAGGATTTGAGACTGATATTACCGTTGAAGTTAATGAAATCAAG
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-----------------------------------------gtaagctttg-tgaatcagtattcttgagtgtgatcgaatatgt-gttgttagtttctaaaagtgaatttg-ttttgctgaa-tatagGCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCGAGGCTTTGAGACTGATATTTCTGTTGAAGTGAATGAAATTAAG
upper sequence: AT1G75220.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA17G36950.1 (Glycine max), 3'ss of exon 8
gtaagccttacagtagtttgcttattcttcttgagtttagtgcatattttggttactccactcttttttttttttttaataacatcattaatcatctctgatgggatacttgatttcgttaaaatgtagGCAAAAATGGGTATGACAGATGAATTTGAAACTTCATTACAAGTTCTTCGAGGATTTGAGACTGATATTACCGTTGAAGTTAATGAAATCAAG
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----------------------------------------ggtaaactttatgaattggtattcttgagtgtcgtccaatatg--tgttgacagtttctaaaagtgaatttg-ttttgttgaa-tataGGCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCGAGGCTTTGATACTGATATTTCTGTTGAAGTGAATGAAATTAA-
upper sequence: AT1G75220.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv18s0001g12560.t01 (Vitis vinifera), 3'ss of exon 8
gtaagccttacagtagtttgcttattcttcttgagtttagtgcatattttggttactccactcttttttttttttttaataacatcattaatcatctctgatgggatacttgatttcgttaaaatgtagGCAAAAATGGGTATGACAGATGAATTTGAAACTTCATTACAAGTTCTTCGAGGATTTGAGACTGATATTACCGTTGAAGTTAATGAAATCAAG
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-----------------------------------------gtaagcttcatgtggtatattttctctattgataggggtcagtatattgat-acagtttttgagtcattc---tttcttgaaac--agGCAAAGATGGGTATGACAGAAGATTTTGAAGCTTCTTTGCAAGTTCTTCGGGGGTTTGATACTGATATTACTTTTGAAGTGAATGAAATCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86059936|gb|DR355693.1|DR355693EST: CATAATTGATACCAGGTCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTG GCAAAAATGGGTATGACAGATGAATTTGAAACTTCATTACAAGTTCTTCGA
genomic: CATTATTGATACCAGGTCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTGgtaagcctta ... taaaatgtagGCAAAAATGGGTATGACAGATGAATTTGAAACTTCATTACAAGTTCTTCGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttaataacatcattaatcatctctgatgggatacttgatttcgttaaaatgtagGCAAAAATGGGTATGACAGATGAATTTGAAACTTCATTACAAGTTCTTCGAGGATTTGAGACTGATATTACCGTTGAAGTTAATGAAATCAAG
tttcgtt CT-rich tract
ttaaaatgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagccttacagtagtttgcttattcttcttgagtttagtgcatattttggttactccactcttttttttttttttaataacatcattaatcatctctgatgggatacttgatttcgttaaaatgtagGCAAAAATGGGTATGACAGATGAATTTGAAACTTCATTACAAGTTCTTCGAGGATTTGAGACTGATATTACCGTTGAAGTTAATGAAATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG