1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttctaagctctaaatcaaattttgactacacttactaaaacaaaggcttttctaaactctaacttacttgctaaatttggttagGAGGCTAGAAGCAGATAGGTTTTTCACTACGAACTTCAATGAGAAGACTTATACTAAGGAAGGGTTAGAGTGGGTCAATACTACAGAGACTTTAAAAGAT
species | Arabidopsis thaliana |
transcript | AT1G73680.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAG GAGGCTAGAAGCAGATAGGTTTTTCACTACGAACTTCAATGAGAAGACTTAEST: gi|125048607|gb|EL120876.1|EL120876
genomic: AAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAGgtttctaagc ... atttggttagGAGGCTAGAAGCAGATAGGTTTTTCACTACGAACTTCAATGAGAAGACTTA
EST: TTCGCCATTAGCGAAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAG GAGGCTAGAAGCAGATAGGTTTTTCA
genomic: TTCGCCATTAGCGAAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAGgtttctaagc ... atttggttagGAGGCTAGAAGCAGATAGGTTTTTCA
acttactaaaacaaaggcttttctaaactctaacttacttgctaaatttggttagGAGGCTAGAAGCAGATAGGTTTTTCACTACGAACTTCAATGAGAAGACTTATACTAAGGAAGGGTTAGAGTGGGTCAATACTACAGAGACTTTAAAAGAT
taaaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctaagctctaaatcaaattttgactacacttactaaaacaaaggcttttctaaactctaacttacttgctaaatttggttagGAGGCTAGAAGCAGATAGGTTTTTCACTACGAACTTCAATGAGAAGACTTATACTAAGGAAGGGTTAGAGTGGGTCAATACTACAGAGACTTTAAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA