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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaacaacacaagattcaaaatcttcatacgaaagattcatttgataatgtatatattgtttccttcttgtttgtgatactagTGGGATGTTCTTTCAAACGGAAACGCAGTGCAAGAAGTTGCTCACATCTCAAACGGATCACATCCTGGAAACTGCATATCGGTTCTACGT

Basic information

species Arabidopsis thaliana
transcript AT1G73360.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73360.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA16G34350.1 (Glycine max), 3'ss of exon 8
gtaacaacaacacaagattcaaaatcttcatacgaaagattcatttgata-atgtatatattgtttccttcttgtttgtgatactagTGGGATGTTCTTTCAAACGGAAACGCAGTGCAAGAAGTTGCTCACATCTCAAACGGATCACATCCTGGAAACTGCATATCGGTTCTACGT
||    |||       | ||||     | ||  ||     |||  | | | | || | ||   ||   || | |||||      ||||||||||||||||| || || || || |||||||| |||||||| ||  |||| || ||||| ||||| ||||||||||| || || || 
gttgtgaca-tgtttaactcaattgtcttatctgatgttgtcaccttagatacgtttttaacattgtttt-tcgtttggc---ttagTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGA

upper sequence: AT1G73360.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 8
gtaacaacaacacaagattcaaaatcttcatacgaaagattcat-ttgataatgtatatattgtttccttcttgtttgtgatactagTGGGATGTTCTTTCAAACGGAAACGCAGTGCAAGAAGTTGCTCACATCTCAAACGGATCACATCCTGGAAACTGCATATCGGTTCTACGT
||    |||       | ||||     | ||  ||     |||  ||   || || | ||    |  |||||  || |      ||||||||||||||||| || || || || |||||||| |||||||| ||  |||| ||  |||| ||||| ||||||||||| || || || 
gttgtgaca-tgtttaactcaattgtcttatctgatgttgtcaccttagaaacgtttttaacactgtcttctgtttggc----ttagTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgaaagattcatttgataatgtatatattgtttccttcttgtttgtgatactagTGGGATGTTCTTTCAAACGGAAACGCAGTGCAAGAAGTTGCTCACATCTCAAACGGATCACATCCTGGAAACTGCATATCGGTTCTACGT
           atttgat  putative branch site (score: 5)
                               tttccttcttgtttgt  putative PPT
       attcatttgataatgt  TA-rich tract