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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagcttactcatttttttgtttacaagctttaccagtcccatgtgttagcaactttgttacaatcatgacaattttctatgatggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCTAGGAGGGAAAGTATCTGTCAAGCTGATAAACCGAGAAATCAACGAGAGT

Basic information

species Arabidopsis thaliana
transcript AT1G73020.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116423940|gb|EG466532.1|EG466532
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116423946|gb|EG466538.1|EG466538
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116435865|gb|EG478457.1|EG478457
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436463|gb|EG479055.1|EG479055
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116435910|gb|EG478502.1|EG478502
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436478|gb|EG479070.1|EG479070
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436399|gb|EG478991.1|EG478991
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436349|gb|EG478941.1|EG478941
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436465|gb|EG479057.1|EG479057
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116423949|gb|EG466541.1|EG466541
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116423860|gb|EG466452.1|EG466452
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116423780|gb|EG466372.1|EG466372
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436460|gb|EG479052.1|EG479052
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436362|gb|EG478954.1|EG478954
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436484|gb|EG479076.1|EG479076
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436480|gb|EG479072.1|EG479072
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436488|gb|EG479080.1|EG479080
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436474|gb|EG479066.1|EG479066
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436397|gb|EG478989.1|EG478989
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436404|gb|EG478996.1|EG478996
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATAATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116423947|gb|EG466539.1|EG466539
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436479|gb|EG479071.1|EG479071
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436359|gb|EG478951.1|EG478951
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116423849|gb|EG466441.1|EG466441
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436468|gb|EG479060.1|EG479060
EST:     GATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116436486|gb|EG479078.1|EG479078
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116457871|gb|EG500463.1|EG500463
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
EST: gi|116423941|gb|EG466533.1|EG466533
EST:     GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAA                         GTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT
genomic: GAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAgtgagagctt ... atggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccatgtgttagcaactttgttacaatcatgacaattttctatgatggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCTAGGAGGGAAAGTATCTGTCAAGCTGATAAACCGAGAAATCAACGAGAGT
                                  aattttctat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagagcttactcatttttttgtttacaagctttaccagtcccatgtgttagcaactttgttacaatcatgacaattttctatgatggtctcagGTACGTATTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCTAGGAGGGAAAGTATCTGTCAAGCTGATAAACCGAGAAATCAACGAGAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT