1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagctcttctttccttaacccctcttaatctaaaaccatcggtttttagtttaaggctgaattactcggatattttgcagTTGATTATGATGGAAGCAAACCTTCTGGTAAAACCAAAGGTGGAAGCAACAAGACGCAGAATGGCTCTGCAGATAGCAGCAAGACTGAGAATGGCTCTGC
species | Arabidopsis thaliana |
transcript | AT1G69250.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTCGTGTAAAGGAAAAAGAAG TTGATTATGATGGAAGCAAACCTTCTGGTAAAACCAAAGGTGGAAGCAACAEST: gi|86088195|gb|DR383954.1|DR383954
genomic: CTTCGTGTAAAGGAAAAAGAAGgtaagctctt ... tattttgcagTTGATTATGATGGAAGCAAACCTTCTGGTAAAACCAAAGGTGGAAGCAACA
EST: CACGCCCTTCATGCTTGCAGACCGTAAGCTTCGTGTAAAGGAAAAAGAAG TTGATTATGATGGAAGCAAACCTTCTGGTATAACCAAAGGTGGAAGCAACA
genomic: CACGCCCTTCATGCTTGCAGACCGTAAGCTTCGTGTAAAGGAAAAAGAAGgtaagctctt ... tattttgcagTTGATTATGATGGAAGCAAACCTTCTGGTAAAACCAAAGGTGGAAGCAACA
taatctaaaaccatcggtttttagtttaaggctgaattactcggatattttgcagTTGATTATGATGGAAGCAAACCTTCTGGTAAAACCAAAGGTGGAAGCAACAAGACGCAGAATGGCTCTGCAGATAGCAGCAAGACTGAGAATGGCTCTGC
atctaaa putative branch site (score: 3)
tttttagtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctcttctttccttaacccctcttaatctaaaaccatcggtttttagtttaaggctgaattactcggatattttgcagTTGATTATGATGGAAGCAAACCTTCTGGTAAAACCAAAGGTGGAAGCAACAAGACGCAGAATGGCTCTGCAGATAGCAGCAAGACTGAGAATGGCTCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA