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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatgctttctatttcaatttgaaacaaaacttctcttatgtagatagtagtgtctctttcgtttaactcatatttccttatgtctttgagcagTTGGTTTCCCTTGTTGTCACACAATTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAG

Basic information

species Arabidopsis thaliana
transcript AT1G67320.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875223|gb|AU236054.1|AU236054
EST:     TCGGAGAGTATTATTACAGAAANGGGTTTGNCTTTGTAGCTGG-ACTCAG                         TTGGTTTCCCTTGTTG
genomic: TCGGAGAGTATTATTACAGAAA-GGGTTTGCCTTTGTAGCTGGTACTCAGgtaagtaatg ... ctttgagcagTTGGTTTCCCTTGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagatagtagtgtctctttcgtttaactcatatttccttatgtctttgagcagTTGGTTTCCCTTGTTGTCACACAATTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAG
                      gtttaac  putative branch site (score: 3)
                                  tttccttatgtcttt  putative PPT
                       tttaactcatattt  TA-rich tract