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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcttcagaattcacatcttagattttacaattttctgtcgtatgctgagctgaaaattgcactgaattttacattagagcttctttactttccttttgtcatcacttcttttgaacgctcatcatcttatgcagCAAGGGAAGATAGCTGAAGCAGAAGCTGAGTTTGAGAGGCTGCTTGGAGGGTCTCATGTGAAAACAGCAATGGCAGAATTATACAAACTAGATCTAGACA

Basic information

species Arabidopsis thaliana
transcript AT1G67300.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67300.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA07G09270.3 (Glycine max), 3'ss of exon 8
gtctgcttcagaattcacatcttagattttacaattttctgtcgtatgctgagctgaaaattgcactgaattttacattagagcttctttactttccttttgtcatcacttcttttgaacgctcatcatcttatgcagCAAGGGAAGATAGCTGAAGCAGAAGCTGAGTTTGAGAGGCTGCTTGGAGGGTCTCATGTGAAAACAGCAATGGCAGAATTATACAAACTAGATCTAGACA
                      |  || |    | | ||| |  |||      || |    | ||   | ||| || || ||  | ||||||||     |||  || | | || ||         |  | | ||| ||||||| |  |  ||||||||||||||||||||||||||||| ||||| |  ||  | |  |||   |||||| |||| |||| |||   ||||  ||   
----------------------tgtatatctacactctcttttctatttct--ctcatccctacatcca-tttaacttttga--tcctttacttaatccttg--attattcctctt---------tgttttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTATCAGAAGCAAAATTTGCAATGTCAGAGTTATCCAAGGCAGATAGAGGAG

upper sequence: AT1G67300.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA09G32510.1 (Glycine max), 3'ss of exon 8
gtctgcttcagaattcacatcttagattttacaattttctgtcgtatgctgagctgaaaattgcactgaattttacattagagcttctttactttccttttgtcatcacttcttttgaacgctcatcatcttatgcagCAAGGGAAGATAGCTGAAGCAGAAGCTGAGTTTGAGAGGCTGCTTGGAGGGTCTCATGTGAAAACAGCAATGGCAGAATTATACAAACTAGATCTAGACA
                       | | |||    |    ||| || |  |||||       | ||   | |||||| |  || |||  ||||||     |||  || | | || ||         |  | | ||| ||||||| |  |  |||||||||||||||||||||||||| || || || |  ||  | |  |||   |||||| | || |||| |||  |||||  ||   
----------------------caaagttttttctcacttgtagtct--tgagcgagtccctacatcca-ttttacttctgatctt--ttacttaatccttg--attattcctctt---------ttttgtgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGACTTCTGGGTGTATCAGAAGCAAAATTTGCAATGTCGGAGTTATCCAAGGTAGATAGAGGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctttactttccttttgtcatcacttcttttgaacgctcatcatcttatgcagCAAGGGAAGATAGCTGAAGCAGAAGCTGAGTTTGAGAGGCTGCTTGGAGGGTCTCATGTGAAAACAGCAATGGCAGAATTATACAAACTAGATCTAGACA
                                          tcatctt  CT-rich tract
     ttacttt  TA-rich tract