Sequence
atgc intronic sequence ATGC exonic sequencegtaagaaaatcatatttttattctactttaacatcagaattatcaaaatcatgaatatatattacttaatttgaagGGCGAGGGTAAACATTATGAATTACCAGAGAAGAGGAGAAGCGATGTTTGCACCATAATGTATACAAGTGGCACAACTGGTGATCCTAAAGGAGTATTGC
Basic information
species | Arabidopsis thaliana |
transcript | AT1G64400.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G64400.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G152127_T01 (Zea mays), 3'ss of exon 8
-------------------------------------------------------------------------------------------------------------gtaagaaaatcat-atttttattctactttaacatcagaattatcaaaatcatgaatatatattacttaatttgaagGGCGAGGGTAAACATTATGAATTACCAGAGAAGAGGAGAAGCGATGTTTGCACCATAATGTATACAAGTGGCACAACTGGTGATCCTAAAGGAGTATTGC
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gtaaggttctcctttcctgaccaaatcacacatggaatgaataagtgcttagttacaagaatattaataatgtgttaaggcatgtttttcatttcaaatttatacatttttgggggcatccttgcgagaaatatgccttgatatatcagttag-aaaattatt--ttttttctgttctaccaacagGGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGTACAATAATGTACACCAGTGGAACAACTGGTGATCCTAAGGGAGTACTAA
upper sequence: AT1G64400.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA05G36910.1 (Glycine max), 3'ss of exon 8
----------------------gtaagaaaatcatatttttattctactttaac--atcagaattatcaaaa-tcatgaatatatattacttaatttgaagGGCGAGGGTAAACATTATGAATTACCAGAGAAGAGGAGAAGCGATGTTTGCACCATAATGTATACAAGTGGCACAACTGGTGATCCTAAAGGAGTATTGC
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taactctcagctcagaaaaggccaaggaaagcaatgtgtttatgg-atattaactggtttcatttctcattcctcattccagtttttgatgtctagagcagGGTCATAATCAGAGTTTTGATCTTCCTGTTAAAAAAAAAAGTGATGTGTGTACAATAATGTATACAAGTGGAACTACTGGTGATCCCAAGGGAGTTTTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125242898|gb|EL256983.1|EL256983EST: ATTCATGGGACCAATTCTTGAAGCTA GGCGAGGGTAAACATTATGAATTACCAGAGAAGAGGAGAAGCGATGTTTGC
genomic: ATTCATGGGACCAATTCTTGAAGCTAgtaagaaaat ... taatttgaagGGCGAGGGTAAACATTATGAATTACCAGAGAAGAGGAGAAGCGATGTTTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctactttaacatcagaattatcaaaatcatgaatatatattacttaatttgaagGGCGAGGGTAAACATTATGAATTACCAGAGAAGAGGAGAAGCGATGTTTGCACCATAATGTATACAAGTGGCACAACTGGTGATCCTAAAGGAGTATTGC
aattatcaaaatcatg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagaaaatcatatttttattctactttaacatcagaattatcaaaatcatgaatatatattacttaatttgaagGGCGAGGGTAAACATTATGAATTACCAGAGAAGAGGAGAAGCGATGTTTGCACCATAATGTATACAAGTGGCACAACTGGTGATCCTAAAGGAGTATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG