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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgactgcgtggcaccaacaattcactttaatgttgttttgctattgcgttacttgtttctaacgtagtataacttattagGAGAGAGGTCTAGCAAGTGATAGCTGCAGTTTTTCTCTATACCTTTGTTATTTGGTATATGCACCCTTGTACCTTGCGGGGCCAATTATAAGCTTTAATG

Basic information

species Arabidopsis thaliana
transcript AT1G57600.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G57600.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 9
----------------------------------------------------------------------------------gttgactgcgtggcaccaacaattcac--tttaatgttgttttgctattgcgttacttgtttct---aacgtagtataacttattagGAGAGAGGTCTAGCAAGTGATAGCTGCAGTTTTTCTCTATACCTTTGTTATTTGGTATATGCACCCTTGTACCTTGCGGGGCCAATTATAAGCTTTAATG
                                                                                      | ||  ||     || || | |   |||   || |   ||      | ||  ||    ||   ||  |    ||  |||  |||||||| |||||   | ||| |  |   | | |     |||||||||||||||||||||||||||  | ||  |||| || |||||  | | ||| ||||
gttagcatagctgctagttaaactcaagcacaagttgaaatttatcatagttgcctagttatgttttatgctgggttttttttcctaatgtttgtttttaagaagttataatttctagtggccatgtggacacattttttccacctcataattttaattacattaccagGAGAGAAGTCTACACAATGACAAGTTTGGATATATCACATACCTTTGTTATTTGGTATATGCACCACTTTATATTGCTGGTCCAATACTGAACTTCAATG

upper sequence: AT1G57600.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA10G41940.2 (Glycine max), 3'ss of exon 8
---------------------------------------------------------------------gttgactgcgtggcaccaacaattcactttaa-----tgttgttttgctattgcgt-----tacttgtttctaacgtagta--------taacttattagGAGAGAGGTCTAGCAAGTGATAGCTGCAGTTTTTCTCTATACCTTTGTTATTTGGTATATGCACCCTTGTACCTTGCGGGGCCAATTATAAGCTTTAATG
                                                                     | ||  |   |  | | ||   ||   |||||     | |  |||   |   || |      || |||||   || |  ||        ||  |||  |||||||| |||||   | ||| | ||   | | |     |||||||||||||||||||||||||||  | ||  ||||||| |||||  | | ||| ||||
gttagcatagctgctagttaaactcaagcacaagttgaagtttatcatagttgccgagttatgttttatgctgggtttttttccctaatgtttgtttttaagtagttatgatttcaattgggcatgtggacacatgttttccacctcataattttaattacattaccagGAGAGAAGTCTACATAATGACAACTTTGGATATATCACATACCTTTGTTATTTGGTATATGCACCACTTTATATTGCGGGTCCAATACTGAACTTCAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaatgttgttttgctattgcgttacttgtttctaacgtagtataacttattagGAGAGAGGTCTAGCAAGTGATAGCTGCAGTTTTTCTCTATACCTTTGTTATTTGGTATATGCACCCTTGTACCTTGCGGGGCCAATTATAAGCTTTAATG
                                       tagtataacttatta  TA-rich tract