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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtttttttactgttctatccttgcgatgatatataattgtagactatatagtttaacattggtgtacatgatgttgttgttgcagACTGAAAGTGCAGCTGCATGGATTGGGCAGGGATTTGGCAACCTGCAGGTGAATCCAATGTATAACCTAGCATACCAAGGTCAGCCACTTGGTTTTCCAG

Basic information

species Arabidopsis thaliana
transcript AT1G55820.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116477541|gb|EG520133.1|EG520133
EST:     CTACAACCACCTTAAATTCTATCCATAGTGAAGAAAAGGCATCTCACCTG                         ACTGAAAGTGCAGCTGCATGGATTGGGCAGGGATTTGGCAACCTGCAGGTG
genomic: CTACAACCACCTTAAATTCTATCCATAGTGAAGAAAAGGCATCTCACCTGgtcagttttt ... gttgttgcagACTGAAAGTGCAGCTGCATGGATTGGGCAGGGATTTGGCAACCTGCAGGTG
EST: gi|86060063|gb|DR355820.1|DR355820
EST:     CTACAACCAGCTTAAATTCTATCCATAGGGAAGAAAAGGCATCTCACCTG                         ACTGAAAGTGCAGCTGCGTGGATTGGGCAGGGATTTGGCAACCTGCAGGTG
genomic: CTACAACCACCTTAAATTCTATCCATAGTGAAGAAAAGGCATCTCACCTGgtcagttttt ... gttgttgcagACTGAAAGTGCAGCTGCATGGATTGGGCAGGGATTTGGCAACCTGCAGGTG
EST: gi|86060062|gb|DR355819.1|DR355819
EST:     CTACAACCACCTTAAATTCTATCCATAGTGAAGAAAAGGCATCTCACCTG                         ACTGAAAGTGCAGCTGCATGGATTGGGCAGGGATTTGGCAACCTGCAGGTG
genomic: CTACAACCACCTTAAATTCTATCCATAGTGAAGAAAAGGCATCTCACCTGgtcagttttt ... gttgttgcagACTGAAAGTGCAGCTGCATGGATTGGGCAGGGATTTGGCAACCTGCAGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atataattgtagactatatagtttaacattggtgtacatgatgttgttgttgcagACTGAAAGTGCAGCTGCATGGATTGGGCAGGGATTTGGCAACCTGCAGGTGAATCCAATGTATAACCTAGCATACCAAGGTCAGCCACTTGGTTTTCCAG
                    gtttaac  putative branch site (score: 3)
              tatatagtttaacatt  TA-rich tract