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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataattgaacttctctcaaatgattaaaattgtttccatgaaaatgcttctgtcatcttatgaaatcccgaatcagATGAGAGAAGAGACTTATACCGCATTTGAGAATATCTACCCAGTTCTTAGAGAATTCAGGAAGGTCCAGCAATAATAGTAT

Basic information

species Arabidopsis thaliana
transcript AT1G55520.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831853|gb|CK121537.1|CK121537
EST:     TTGTACTGCTTATTTTTGTGTCAGGAAAGATTGTTATAACGGGAGCCAAG                         ATGAGAGAAGAGACTTATACCGCATTTGAGAATATCTACCCAG
genomic: TTGTACTGCTTATTTTTGTGTCAGGAAAGATTGTTATAACTGGAGCCAAGgtaataattg ... cccgaatcagATGAGAGAAGAGACTTATACCGCATTTGAGAATATCTACCCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattaaaattgtttccatgaaaatgcttctgtcatcttatgaaatcccgaatcagATGAGAGAAGAGACTTATACCGCATTTGAGAATATCTACCCAGTTCTTAGAGAATTCAGGAAGGTCCAGCAATAATAGTAT
     aaattgttt  TA-rich tract