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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagcttcttattcaatttgccagtgtttctctcccacatatgtgagtaagtttttcgtctatccatatctaacctctgcttcagGCTGAAAGGTCCTTTGTAATGAGACGGGATAAGGAACTAAATCTGAGGGCAGAATCTCTAGAGGCAGCCAACCATAAGACTACCACTGTTGGTTCTAGAA

Basic information

species Arabidopsis thaliana
transcript AT1G55250.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125118360|gb|EL167113.1|EL167113
EST:     ACTGGAATGCTGAACTGGACCGGTACAAAATTCTGACTGAGGCCATTCAG                         GCTGAAAGGTCCT
genomic: ACTGGAATGCTGAACTGGACCGGTACAAAATTCTGACTGAGGCCATTCAGgtcagcttct ... tctgcttcagGCTGAAAGGTCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcccacatatgtgagtaagtttttcgtctatccatatctaacctctgcttcagGCTGAAAGGTCCTTTGTAATGAGACGGGATAAGGAACTAAATCTGAGGGCAGAATCTCTAGAGGCAGCCAACCATAAGACTACCACTGTTGGTTCTAGAA
                                     atctaac  putative branch site (score: 2)
                                           cctctgcttc  CT-rich tract
                 taagttttt  TA-rich tract