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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctgtgtctgtgctctccttaacttgttattatattactctatattacatttctaaactaaagagcaattcgactagGTTGCTATATTTCTAATTCAACGAAACCGACATGCCTTGATTGGAAGAGCAATGGATGATCAAGACATGAGTAAAGTTCTTAAATTTTTGAGAAATGACT

Basic information

species Arabidopsis thaliana
transcript AT1G51610.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G51610.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA07G02280.2 (Glycine max), 3'ss of exon 7
---------gtatgtctgtgtctgtgctctccttaacttgttattatattactctatattacatttctaaactaaagagcaattcgactagGTTGCTATATTTCTAATTCAACGAAACCGACATGCCTTGATTGGAAGAGCAATGGATGATCAAGACATGAGTAAAGTTCTTAAATTTTTGAGAAATGACT
         ||      |           |||  |     ||    |  || ||||| |||  ||  |    |   ||   |  |    |||| ||||||||||| || ||  ||||||| ||||| |||||||| ||||| |||||||| || || |||   ||||| ||| | ||||||| ||| ||| 
gtaaagagggttcagaagacagcaaaaattccccaggcatttgaagtgata-tctattttattttaattccattctgaattaaccatgcagGTAGCTATATTTCTTATCCAGAGAAACCGGCATGCTTTGATTGGTAGAGCTATGGATGACCATGATATGGAGAAAGTACTTCAGTTTTTGAAAAAAGACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116421540|gb|EG464132.1|EG464132
EST:     CTATCTATGATCCTATAGGATCAATTGTAGTCGGAAATTTACTTGGAATG                         GTTGCTATATTTCTAATTCAACGAAACCGACATGCCTTGATTGGAAGAGCA
genomic: CTATCTATGATCCTATAGGATCAATTGTAGTCGGAAATTTACTTGGAATGgtatgtctgt ... attcgactagGTTGCTATATTTCTAATTCAACGAAACCGACATGCCTTGATTGGAAGAGCA
EST: gi|86065271|gb|DR361028.1|DR361028
EST:     CTATCTATGATCCTATAGGATCAATTGTAGTCGGAAATTTACTTGGAATG                         GTTGCTATATTTCTAATTCAACGAAACCGACATGCCTTGATTGGAAGAGCA
genomic: CTATCTATGATCCTATAGGATCAATTGTAGTCGGAAATTTACTTGGAATGgtatgtctgt ... attcgactagGTTGCTATATTTCTAATTCAACGAAACCGACATGCCTTGATTGGAAGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttattatattactctatattacatttctaaactaaagagcaattcgactagGTTGCTATATTTCTAATTCAACGAAACCGACATGCCTTGATTGGAAGAGCAATGGATGATCAAGACATGAGTAAAGTTCTTAAATTTTTGAGAAATGACT
                                 aactaaa  putative branch site (score: 2)
     tattatattactctat  TA-rich tract