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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatagtctgttgccgaggcatatttaatagtcaacaatcaagagtttaagttttcacaacagctatttgttgacaatgcagGAAACTCAAGAAGTGTATGTTGCTGCATACAAGAGCGATGAGTTTCCAGCATTTTTCACAGAAAAAAGTGGCTGTAAG

Basic information

species Arabidopsis thaliana
transcript AT1G50510.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G50510.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv06s0009g02380.t01 (Vitis vinifera), 3'ss of exon 7
gtatatagtctgttgccgaggcatatt-taatagtcaacaatcaagagttta--agttttcacaacagcta--tttgttga----caatgcagGAAACTCAAGAAGTGTATGTTGCTGCATACAAGAGCGATGAGTTTCCAGCATTTTTCACAGAAAAAAGTGGCTGTAAG
|||| ||  || |||||     | ||  | | |   |||| | ||     ||  | | ||  |||    ||  |||  |||    |||| ||||||||||||| ||| | ||||||||| || ||||   |||| |||||||||||||||||||||||||||||| | |||
gtatttatccttttgcctccaaacatcatgagaagtaacacttaacttcatattactattatcaattattagcttttatgatcatcaatacagGAAACTCAAGGAGTATGTGTTGCTGCTTATAAGACTAATGAATTTCCAGCATTTTTCACAGAAAAAAGTGGCAGCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagtcaacaatcaagagtttaagttttcacaacagctatttgttgacaatgcagGAAACTCAAGAAGTGTATGTTGCTGCATACAAGAGCGATGAGTTTCCAGCATTTTTCACAGAAAAAAGTGGCTGTAAG
                                         tgttgac  putative branch site (score: 3)
                  tttaagtttt  TA-rich tract