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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcttctaagttctaactaacaagttatagtgatttgaaagcaagtttttctagctaacatttttctcacatatgtatgaccttacagATCCACGTTGCATCGGGTTCTTGGAAACGGTCAGGAACGATATTCT

Basic information

species Arabidopsis thaliana
transcript AT1G35190.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074628|gb|DR370385.1|DR370385
EST:     ATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAA                         ATCCACGTTGCATCGGGTTCTTGGAAACGGTCAGGAACGATATTCT
genomic: ATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAAgtaatcttct ... gaccttacagATCCACGTTGCATCGGGTTCTTGGAAACGGTCAGGAACGATATTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaaagcaagtttttctagctaacatttttctcacatatgtatgaccttacagATCCACGTTGCATCGGGTTCTTGGAAACGGTCAGGAACGATATTCT
                              ttctcac  putative branch site (score: 2)
                      taacattttt  TA-rich tract