Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagactcgattattggataaagcgttttcgtcttattttagcgttcaggaagatagaggatttagttattttcttgtacctaaaatgaaagatgtacttacaaatcatggccatttcacctgatatgcagATCCTGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCATTACTCAAATTGATAC

Basic information

species Arabidopsis thaliana
transcript AT1G34320.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G34320.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA20G31400.1 (Glycine max), 3'ss of exon 10
gtgagactcgattattggataaagcgttttcgtcttattttagcgttcaggaagatagaggatttagttattttcttgt-acctaaaatgaaagatgtacttacaaatcatggccatttcacctgatatgcagATCCTGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCATTACTCAAATTGATAC
                                |||| ||||  |   ||  | | ||||| || |  |  | ||  |   |    |||| |||  |||  ||     | ||   | | | ||   || ||||||| |||||||||| || || ||  | | |  ||| ||||| ||  |||| |||||||||||||| |||||||| || ||||| || ||||||||||||||
------------------------------tctcttctttttactgacaaaatg-tagagcatcttttgctgttgataagataccaaataaaacgtgtcttttacgcttattttcctct-acaacat-tgcagATACTGATAAGCCAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGGTCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATAC

upper sequence: AT1G34320.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA10G36210.1 (Glycine max), 3'ss of exon 10
gtgagactcgattattggataaagcgttttcgtcttattttagcgttcaggaagatagaggatttagttatt-ttcttgtaccta--aaatgaaagatgtacttacaaatcatggccatttcacctgatatgcagATCCTGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCATTACTCAAATTGATAC
                                | |  ||||| ||   |     | |      || | | || ||    ||||    |||| ||| ||||  ||   | |  |  |  |   ||||    ||||||| |||||||||  || || ||  | | |  ||| ||||| ||  |||| |||||||||||||| |||||||| || ||||| || ||||||||||||||
-------------------------------ctttctttttaccgacaaaatgtagaccatcctttgctgttgttaagataccaggtaaataaaacatgtcatttatacttcttcctctacaacct----tgcagATACTGATAAGCAAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGATCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164215099|gb|ES062540.1|ES062540
EST:     GCCTTTGGTGGTGCGG                         ATCCTGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCT
genomic: GCCTTTGGTGGTGCGGgtgagactcg ... tgatatgcagATCCTGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacctaaaatgaaagatgtacttacaaatcatggccatttcacctgatatgcagATCCTGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCATTACTCAAATTGATAC
                                      tttcacct  CT-rich tract
     taaaatgaaa  TA-rich tract