1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaataatcgaacacacctccacacatttctttgagtcatattctgagtagtctttctttatatcttcacagGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTTTACCTATAAG
species | Arabidopsis thaliana |
transcript | AT1G32790.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTTTGTAGAGTTCGTAATG GCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTEST: gi|86081011|gb|DR376768.1|DR376768
genomic: CTTTTGTAGAGTTCGTAATGgtaataatcg ... atcttcacagGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCT
EST: TTGGAGATTATCAACACTCGACTCGTATTGCTTTTGTAGAGTTCGTAATG GCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTEST: gi|164153640|gb|ES142973.1|ES142973
genomic: TTGGAGATTATCAACACTCGACTCGTATTGCTTTTGTAGAGTTCGTAATGgtaataatcg ... atcttcacagGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCT
EST: GTAGAGTTCGTAATG GCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTEST: gi|124790723|gb|EH880402.1|EH880402
genomic: GTAGAGTTCGTAATGgtaataatcg ... atcttcacagGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCT
EST: TTGGAGATTATCAACACTCGACTCGTATTGCTTTTGTAGAGTTCGTAATG GCGGAAAGCGCAATAGCTGCTCTCAACTGCAEST: gi|125213369|gb|EL228201.1|EL228201
genomic: TTGGAGATTATCAACACTCGACTCGTATTGCTTTTGTAGAGTTCGTAATGgtaataatcg ... atcttcacagGCGGAAAGCGCAATAGCTGCTCTCAACTGCA
EST: TTGGAGATTATCAACACTCGACTCGTATTGCTTTTGTAGAGTTCGTAATG GCGGAAAGCGCAATAGCTGCTCTCAAEST: gi|86051676|gb|DR347431.1|DR347431
genomic: TTGGAGATTATCAACACTCGACTCGTATTGCTTTTGTAGAGTTCGTAATGgtaataatcg ... atcttcacagGCGGAAAGCGCAATAGCTGCTCTCAA
EST: TTGGAGATTATCAACACTCGACTCGTATTGCTTTTGTAGAGTTCGTAATG GCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGATGTTCTTGGTTCT
genomic: TTGGAGATTATCAACACTCGACTCGTATTGCTTTTGTAGAGTTCGTAATGgtaataatcg ... atcttcacagGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCT
ctccacacatttctttgagtcatattctgagtagtctttctttatatcttcacagGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTTTACCTATAAG
tctttctttatatctt CT-rich tract
tttctttatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatcgaacacacctccacacatttctttgagtcatattctgagtagtctttctttatatcttcacagGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTTTACCTATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG