Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtatttctaattaaagccttaccttttgacgtcaatataacttaccatgtcatgtgatcttgaatgttctttggttttaattctcggatgtcagGTTTCCGCTGAAAGCTGTTAACGTAATGCATACTGTGGCGTTGAGAACCGAGGCAAGTCTACCTGTCAGAACCTCGGCATCCCGTACCACTGCTTACAAG

Basic information

species Arabidopsis thaliana
transcript AT1G32440.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G32440.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv02s0012g01170.t01 (Vitis vinifera), 3'ss of exon 8
gttcgtatttctaattaaagccttaccttttga-cgtca-atataacttaccatgtcatgtgatcttgaatgttctttggttttaattctcg-gatgtc---agGTTTCCGCTGAAAGCTGTTAACGTAATGCATACTGTGGCGTTGAGAACCGAGGCAAGTCTACCTGTCAG---AACCTCGGCATCCCGTACCACTGCTTACAAG
       |    | |||   | |   |||||||  |||  |  | |  ||   |    |   | ||   || |    ||  |  |||| |    || ||   |||| |||| ||||||||||||| ||||||||||||||||| ||||| || ||| | |||||| |   |||   |||  |  ||   |  || |   | |||   
----aagtacacacttaggacttcttcttttgaatgtcttacttgatgtatgtttgtttcctaactgttatatcaaatgtatcaaattgtaacaatttctcaagGTATCCGTTGAAAGCTGTTAAAGTAATGCATACTGTGGCATTGAGGACTGAGTCTAGTCTATCAACCAGCACAACTCCTCCAAGTCAAACTATACCCTAC---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164065675|gb|ES003345.1|ES003345
EST:     GATGCTATCATGCTTTCTGGTGAAACCGCACATGGAAA                         GTTTCCGCTGAAAGCTGTTAACGTAATGCATACTGTGGCGTTGAGAACCGA
genomic: GATGCTATCATGCTTTCTGGTGAAACCGCACATGGAAAgttcgtattt ... cggatgtcagGTTTCCGCTGAAAGCTGTTAACGTAATGCATACTGTGGCGTTGAGAACCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttaccatgtcatgtgatcttgaatgttctttggttttaattctcggatgtcagGTTTCCGCTGAAAGCTGTTAACGTAATGCATACTGTGGCGTTGAGAACCGAGGCAAGTCTACCTGTCAGAACCTCGGCATCCCGTACCACTGCTTACAAG
                                         ttctc  CT-rich tract
                                   ttttaattct  TA-rich tract