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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaagatataaacaatcttaaacttactttttcccgagttactctgttcttgctcaaacttcatttcgatgttttcggacgctgttttgcagCTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATGACTGATTCTGGGAGTCAACTATCATCCTTAGTGTCTGGATTTAGAAACT

Basic information

species Arabidopsis thaliana
transcript AT1G29200.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116408977|gb|EG451569.1|EG451569
EST:     CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAG                         CTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATG
genomic: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAGgtaaaaagat ... tgttttgcagCTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATG
EST: gi|116408966|gb|EG451558.1|EG451558
EST:     CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAG                         CTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATG
genomic: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAGgtaaaaagat ... tgttttgcagCTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATG
EST: gi|116408964|gb|EG451556.1|EG451556
EST:     CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAG                         CTAGCTGCACTAGATTTCATAGCTTGTATA
genomic: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAGgtaaaaagat ... tgttttgcagCTAGCTGCACTAGATTTCATAGCTTGTATA
EST: gi|116408967|gb|EG451559.1|EG451559
EST:     CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTTTCAG                         CTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATG
genomic: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAGgtaaaaagat ... tgttttgcagCTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATG
EST: gi|116408965|gb|EG451557.1|EG451557
EST:     CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAG                         CTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATG
genomic: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAGgtaaaaagat ... tgttttgcagCTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttactctgttcttgctcaaacttcatttcgatgttttcggacgctgttttgcagCTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATGACTGATTCTGGGAGTCAACTATCATCCTTAGTGTCTGGATTTAGAAACT
                                            ctgtttt  CT-rich tract
                      ttcattt  TA-rich tract