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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatcctctaacttctgcatctatatatatccaaagcaaatctaatctttatttcagaatctaagtactttttgtcttaaatccaacacaacattatctatcactcactcttttcttcttttcagGCTGTAGCTAGCAAAGATGGAGATGAAAGCGATACATGGAGTGATACGTAAAAGCCCTTTATCAGATTCCATTTCATCTTTGTAATCTACTCTCTGAACG

Basic information

species Arabidopsis thaliana
transcript AT1G29170.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116432918|gb|EG475510.1|EG475510
EST:     TAAACACTAAGATCAGCGCGATTTTGGAGAAAGCAAACTCAATACGCCAG                         GCTGTAGCTAGCAAAGATGGAGATGAAAGCGATACATGGAGTGATACGTAA
genomic: TAAACACTAAGATCAGCGCGATTTTGGAGAAAGCAAACTCAATACGCCAGgttcatcctc ... ttcttttcagGCTGTAGCTAGCAAAGATGGAGATGAAAGCGATACATGGAGTGATACGTAA
EST: gi|116432910|gb|EG475502.1|EG475502
EST:     TAAACACTAAGATCAGCGCGATTTTGGAGAAAGCAAACTCAATACGCCAG                         GCTGTAGCTAGCAAAGATGGAGATGAAAGCGATACATGGAGTGATACGTAA
genomic: TAAACACTAAGATCAGCGCGATTTTGGAGAAAGCAAACTCAATACGCCAGgttcatcctc ... ttcttttcagGCTGTAGCTAGCAAAGATGGAGATGAAAGCGATACATGGAGTGATACGTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtcttaaatccaacacaacattatctatcactcactcttttcttcttttcagGCTGTAGCTAGCAAAGATGGAGATGAAAGCGATACATGGAGTGATACGTAAAAGCCCTTTATCAGATTCCATTTCATCTTTGTAATCTACTCTCTGAACG
                               cactcac  putative branch site (score: 2)
                       ttatctatcactcact  CT-rich tract
                      attatctat  TA-rich tract