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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatcaatgtctctctgttaaacttttacttgtcttcatgatttaatggtggatgtttttcttgcaagaacagTGGAGATCAAGATTCTGTGATCCCGTTGACAGGAAGTAGAACCTTAGTGAGTAGATTGGCCAAACAATTGGGACTGAGAACAAGTGTACCTTATCGAGTC

Basic information

species Arabidopsis thaliana
transcript AT1G28110.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116464137|gb|EG506729.1|EG506729
EST:     AATATCGTAGGGAGCCTTGTTAAAGCTGGAGTTCCAGTTCTTGTCTACAG                         TGGAGATCAAGATTCTGTGATCCCGTTGACAGGAAGTAGAACCTTAGTGAG
genomic: AATATCGTAGGGAGCCTTGTTAAAGCTGGAGTTCCAGTTCTTGTCTACAGgtaaatatca ... gcaagaacagTGGAGATCAAGATTCTGTGATCCCGTTGACAGGAAGTAGAACCTTAGTGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaacttttacttgtcttcatgatttaatggtggatgtttttcttgcaagaacagTGGAGATCAAGATTCTGTGATCCCGTTGACAGGAAGTAGAACCTTAGTGAGTAGATTGGCCAAACAATTGGGACTGAGAACAAGTGTACCTTATCGAGTC
                      atttaat  putative branch site (score: 4)
                                     tttttcttgc  putative PPT
                   atgatttaat  TA-rich tract